View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_7 (Length: 570)
Name: NF0839_low_7
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 30 - 565
Target Start/End: Complemental strand, 55642014 - 55641478
Alignment:
| Q |
30 |
attatcgcaacattttatatagaccctgttgtgctttctccccaaagatgttccatgcacatgtagtttaaaattcatacaacattaatatatatgcttt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55642014 |
attatcgcaacattttatatagaccctgttgtgctttctccccaaagatgttccatgcacatgtagtttaaaattcatacaacattaatatatatgcttt |
55641915 |
T |
|
| Q |
130 |
tatgcaaatgttaggagaatttgaaaattctctaaccccagaaaaagctataccgtataacttaaggattcaacgacacaaaatatcaaacctcatgaca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
55641914 |
tatgcaaatgttaggagaatttgaaaattctctaaccccagaaaaagctataccatatagcttaaggattcaacgacacaaaatatcaaacctcatggca |
55641815 |
T |
|
| Q |
230 |
gcaacatggtttggttgctatc--tatgtccatattctgttagatggtgtgtccatacatttcattacatactcttatgaatcacaaagcttttccccct |
327 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
55641814 |
gcaacatggtttggttgctatctatatgtccatattctgttagctggtgtgtccatacatttcattacatactcttat-aatcacaaagcttttccccct |
55641716 |
T |
|
| Q |
328 |
tcccatacgtttagtgcgcaacgtgtaatgttacataatcaagcttataaggttttcnnnnnnnactcaatcactgaatcacaagcttataagctgaata |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55641715 |
tcccatacgtttagtgcgcaacgtgtaatgttacataatcaagcttacaaggttttctttttttactcaatcactgaatcacaagcttataagctgaata |
55641616 |
T |
|
| Q |
428 |
ttgtgaaaacaattaatgcacactaattgtttcaaataataagtaaatcatagatatcattttattgggcatgcttatcatatcttggaagctaggtaca |
527 |
Q |
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| T |
55641615 |
ttgtgaaaacaattcatgcacactaattgtttcaaataataagtaaatcatagatatcattttattgggcatgcttatcatatcttggaagctaggtaca |
55641516 |
T |
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| Q |
528 |
gaagtaagagatcaattaattgctatagtattatctac |
565 |
Q |
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| T |
55641515 |
gaagtaagagatcaattaattgctatagtattatctac |
55641478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 53 - 565
Target Start/End: Complemental strand, 42662350 - 42661839
Alignment:
| Q |
53 |
ccctgttgtgctttctccccaaagatgttccatgcacatgtagtttaaaattcatacaacattaatatatatgcttttatgcaaatgttaggagaatttg |
152 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42662350 |
ccctggtgtgctttctccccaaagatgttccatgcacatgtagtttaaaattcatacaacattaatatatattcttttatgcaaatgttaggagaatttg |
42662251 |
T |
|
| Q |
153 |
aaaattctctaaccccagaaaaagctataccgtataacttaaggattcaacgacacaaaatatcaaacctcatgacagcaacatggtttggttgctatct |
252 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42662250 |
aaaattctctaaccccagaaaaagctataccatatagcttaaggattcaacgacacaaaatatcaaacctcatggcagcaacatggtttggttgctatct |
42662151 |
T |
|
| Q |
253 |
atgtccatattctgttagatggtgtgtccatacatttcattacatactcttatgaatcacaaagcttttcccccttcccatacgtttagtgcgcaacgtg |
352 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662150 |
ctgtccatattctgttagctggtgggtccatacatttcattacatactcttgt-aatcacaaagcttttcccccttcccatacgtttagtgcgcaacgtg |
42662052 |
T |
|
| Q |
353 |
taatgttacataatcaagcttataaggttttcnnnnnnnactcaatcactgaatcacaagcttataagctgaatattgtgaaaacaattaatgcacacta |
452 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662051 |
taatgttacataatcaagcttataaggttttctttttttactcaatcactgaatcacaagcttataagctgaatattgtgaaaacaattaatgcacactc |
42661952 |
T |
|
| Q |
453 |
attgtttcaaataataagtaaatcatagatatcattttattgggcatgcttatcatatcttggaagctaggtacagaagtaagagatcaattaattgcta |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42661951 |
attgtttcaaataataagtaaatcatagatatcattttattgggcatgcttatcatatcttggaagctaggtacagaagtaagagatcaattaattacta |
42661852 |
T |
|
| Q |
553 |
tagtattatctac |
565 |
Q |
| |
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||||||||||||| |
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| T |
42661851 |
tagtattatctac |
42661839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 31036139 - 31036099
Alignment:
| Q |
70 |
cccaaagatgttccatgcacatgtagtttaaaattcataca |
110 |
Q |
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| T |
31036139 |
cccaaagatgttctatgcacatgtagtttaaaattcataca |
31036099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 31036075 - 31036010
Alignment:
| Q |
98 |
taaaattcatacaacattaatatatatgcttttatgcaaatgttaggagaatttgaaaattctctaaccc |
167 |
Q |
| |
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||||||||||| |||||||||||| |||||||||||||| ||||||||||||| ||||| |||||| |
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| T |
31036075 |
taaaattcatagaacattaatata----cttttatgcaaatgctaggagaatttgatgattctttaaccc |
31036010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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