View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0839_low_72 (Length: 226)

Name: NF0839_low_72
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0839_low_72
NF0839_low_72
[»] chr4 (2 HSPs)
chr4 (57-95)||(15509086-15509124)
chr4 (1-37)||(15509031-15509067)


Alignment Details
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 15509086 - 15509124
Alignment:
Q  57 cgtagttaaggctttgtacgatgttattgatgatgtcca 95  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  15509086 cgtagttaaggctttgtacgatgttattgatgatatcca 15509124  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15509031 - 15509067
Alignment:
Q  1 gtttttcttttatattaatccactgcaaatgcgtccc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  15509031 gtttttcttttatattaatccaccgcaaatgcgtccc 15509067  T

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