View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_8 (Length: 533)
Name: NF0839_low_8
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 30 - 524
Target Start/End: Original strand, 8260654 - 8261155
Alignment:
| Q |
30 |
tttctttgctcttttgtttctctaaagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaa |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8260654 |
tttctttgctcttttgtttctctaaagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaa |
8260753 |
T |
|
| Q |
130 |
gcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcactttgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatt |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
8260754 |
gcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcactttgaagagggttttctgtttatgtaagtgtggaaagctgaaatgatt |
8260853 |
T |
|
| Q |
230 |
tagttgtaggttgaacttcatgtagttaacttgatctatttatagatatcatatgagatctgataatagtcaaattgcttggtgagcaaggaaaacataa |
329 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
8260854 |
tagttgtaggttgaacttcatgtagttaacttgatctatttatagatatcatatgagatatgataatagtcaaattgcttggtgaccaaggaaaacataa |
8260953 |
T |
|
| Q |
330 |
agggaccactttgg-------nnnnnnnnnnttcatttgtggctgctttgggcacttgttaattgaaaacaaaatgttgtttcgtttgtctttttcattg |
422 |
Q |
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|||||||||||||| | |||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
8260954 |
agggaccactttggaaaaaaaaataaaaaaaataatttgtggctgctttgaacacttgttaattagaatcaaaatgttgtttcgtttgtctttttcattg |
8261053 |
T |
|
| Q |
423 |
cttatttggtgcgtgcaatatggttatgaggaacaagtcaaggtctaagtatgattgaccatcgccaaacaagtttctttaagagagtacatcaagtatt |
522 |
Q |
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| T |
8261054 |
cttatttggtgcctgcaatatggttatgaggaacaagtcaaggtctaagtatgattgaccatcgccaaacaattttctttaagagagtacatcaagtatt |
8261153 |
T |
|
| Q |
523 |
at |
524 |
Q |
| |
|
|| |
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|
| T |
8261154 |
at |
8261155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 38 - 283
Target Start/End: Original strand, 8265628 - 8265874
Alignment:
| Q |
38 |
ctcttttgtttctctaaagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaactta |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8265628 |
ctcttttgtttctctaaagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaactta |
8265727 |
T |
|
| Q |
138 |
agaaggatgaaatcaaagccat-caaaaagtgatttaatttgcactttgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgt |
236 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||||| |
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| T |
8265728 |
agaaggatgaaatcaaagccataaaaaaagtgatttaatttgcactttgaagtgggtttcttgtttatgtaagtgtggaaagctgaaatgatttagttgt |
8265827 |
T |
|
| Q |
237 |
aggttgaacttcatgtagttaacttgatctatttatagatatcatat |
283 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||||| ||||||| |
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|
| T |
8265828 |
gggttgaacttcatgtaattaacttgatccatttatagacatcatat |
8265874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 38 - 385
Target Start/End: Original strand, 8258555 - 8258915
Alignment:
| Q |
38 |
ctcttttgtttctctaaagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaactta |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
8258555 |
ctcttttgtttctctaaagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaactta |
8258654 |
T |
|
| Q |
138 |
agaaggatgaaatcaaagccat-caaaaagtgatttaatttgcactttgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgt |
236 |
Q |
| |
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| | |||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |
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| T |
8258655 |
aaatggatgaaatcaaagccataaaaaaagtgatttaatttgcactttgaagtgggttttttgtttatgtaagtgtgcaaagctgaaatgatttagttgt |
8258754 |
T |
|
| Q |
237 |
aggttgaacttcatgtagt---taacttgatctatttatag------------atatcatatgagatctgataatagtcaaattgcttggtgagcaagga |
321 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||| || |||| | |
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| T |
8258755 |
gggttgaacttcatgtaattaataacttgatctatttatagagttatcatttcatatcatatgagatatgatgatagtcaaattgcttggcgaccaagca |
8258854 |
T |
|
| Q |
322 |
aaacataaa-gggaccactttggnnnnnnnnnnttcatttgtggctgctttgggcacttgttaat |
385 |
Q |
| |
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||| |||| |||||||||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
8258855 |
gaacctaaatgggaccactttg----aaaaaaattcatttgtggctgctttggacacttgttaat |
8258915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 8352836 - 8352964
Alignment:
| Q |
54 |
aagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaa |
153 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||| |||||||||| ||||||| ||||| | ||||||||| | || || ||||||||||| |
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|
| T |
8352836 |
aagatgaagatttcgattgagatgatttttcatcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaa |
8352935 |
T |
|
| Q |
154 |
agccatcaaaaagtgatttaatttgcact |
182 |
Q |
| |
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||||||||||||||||||| |||||||| |
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| T |
8352936 |
agccatcaaaaagtgatttggtttgcact |
8352964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 8350113 - 8350220
Alignment:
| Q |
75 |
atgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaa |
174 |
Q |
| |
|
|||| |||||| ||| ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
8350113 |
atgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaaaaagtgatttaa |
8350212 |
T |
|
| Q |
175 |
tttgcact |
182 |
Q |
| |
|
|||||||| |
|
|
| T |
8350213 |
tttgcact |
8350220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 8356379 - 8356508
Alignment:
| Q |
30 |
tttctttgctcttttgtttctctaaagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaa |
129 |
Q |
| |
|
|||| ||||||||| |||||||| ||| ||||||||||| || |||||| |||| | ||||||||||||||||||||||||||| | |||| | ||||| |
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|
| T |
8356379 |
tttccttgctctttggtttctctgaagttgaagatttcatttgagatgaattttgagcataatcagaaacttgagatgatgagtttgaagagagaccaaa |
8356478 |
T |
|
| Q |
130 |
gcaacttaagaaggatgaaatcaaagccat |
159 |
Q |
| |
|
|||| | ||||| | | ||||||||||||| |
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|
| T |
8356479 |
gcaattgaagaacggtaaaatcaaagccat |
8356508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 8360552 - 8360681
Alignment:
| Q |
30 |
tttctttgctcttttgtttctctaaagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaa |
129 |
Q |
| |
|
|||| ||| ||||| |||||||| ||| ||||||||||| || |||||| |||||| ||||||||||||||||||||||| ||| | |||| | || || |
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|
| T |
8360552 |
tttccttgatctttggtttctctgaagttgaagatttcatttgagatgaattttcaacataatcagaaacttgagatgataagtttgaagagagaccgaa |
8360651 |
T |
|
| Q |
130 |
gcaacttaagaaggatgaaatcaaagccat |
159 |
Q |
| |
|
|||| | ||||| | ||||||||||||||| |
|
|
| T |
8360652 |
gcaattgaagaaagctgaaatcaaagccat |
8360681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 162
Target Start/End: Original strand, 8252959 - 8253046
Alignment:
| Q |
75 |
atgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaa |
162 |
Q |
| |
|
|||| |||||| ||| ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| |||||||||||||||||||| |
|
|
| T |
8252959 |
atgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa |
8253046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 8265901 - 8265949
Alignment:
| Q |
295 |
atagtcaaattgcttggtgagcaaggaaaacataaa-gggaccactttg |
342 |
Q |
| |
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||||||||||||||||| || |||||| |||||||| |||||||||||| |
|
|
| T |
8265901 |
atagtcaaattgcttggcgaccaaggagaacataaatgggaccactttg |
8265949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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