View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0840_high_1 (Length: 706)

Name: NF0840_high_1
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0840_high_1
NF0840_high_1
[»] chr8 (7 HSPs)
chr8 (288-636)||(7314351-7314690)
chr8 (31-235)||(7314136-7314357)
chr8 (388-645)||(14128592-14128846)
chr8 (574-648)||(16230245-16230318)
chr8 (574-647)||(6813846-6813918)
chr8 (580-648)||(4685774-4685841)
chr8 (575-647)||(25043282-25043353)
[»] scaffold0038 (1 HSPs)
scaffold0038 (509-648)||(47760-47899)
[»] chr6 (5 HSPs)
chr6 (509-648)||(28247598-28247737)
chr6 (575-648)||(33292453-33292525)
chr6 (580-648)||(22474554-22474621)
chr6 (574-640)||(20511840-20511905)
chr6 (575-648)||(16729750-16729822)
[»] scaffold0665 (1 HSPs)
scaffold0665 (388-645)||(2794-3048)
[»] chr4 (5 HSPs)
chr4 (388-647)||(12813983-12814242)
chr4 (574-640)||(37941439-37941504)
chr4 (575-647)||(49947185-49947256)
chr4 (574-646)||(45837654-45837725)
chr4 (580-648)||(25040357-25040424)
[»] chr5 (9 HSPs)
chr5 (401-648)||(31308780-31309026)
chr5 (574-648)||(32664373-32664446)
chr5 (574-647)||(17943245-17943317)
chr5 (574-647)||(20027662-20027734)
chr5 (575-647)||(17009949-17010020)
chr5 (574-648)||(36516941-36517014)
chr5 (574-647)||(8376066-8376138)
chr5 (648-694)||(11834041-11834087)
chr5 (580-653)||(14481686-14481758)
[»] chr2 (4 HSPs)
chr2 (485-647)||(5562478-5562640)
chr2 (575-648)||(33737098-33737170)
chr2 (575-648)||(12531204-12531276)
chr2 (575-654)||(12630218-12630296)
[»] chr3 (3 HSPs)
chr3 (389-510)||(4610919-4611042)
chr3 (574-647)||(15103123-15103195)
chr3 (575-648)||(20129440-20129512)
[»] scaffold0548 (1 HSPs)
scaffold0548 (574-647)||(9809-9881)
[»] chr7 (7 HSPs)
chr7 (571-647)||(20571462-20571537)
chr7 (575-647)||(24501711-24501782)
chr7 (573-648)||(14154121-14154195)
chr7 (575-648)||(23925803-23925875)
chr7 (574-649)||(11506375-11506449)
chr7 (574-649)||(11513098-11513172)
chr7 (575-648)||(27289101-27289173)
[»] chr1 (2 HSPs)
chr1 (574-646)||(17176038-17176109)
chr1 (574-645)||(41944033-41944103)
[»] scaffold0089 (1 HSPs)
scaffold0089 (574-648)||(32775-32848)
[»] scaffold0430 (1 HSPs)
scaffold0430 (584-647)||(12297-12359)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 2e-94; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 288 - 636
Target Start/End: Original strand, 7314351 - 7314690
Alignment:
Q  288 aggagaagaggttttcagcttttgatggagaagagctacacgtacgattgcgttttgttaggtcctcnnnnnnnnnnnnnnnnnnnnnaatatactccaa 387  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||                      ||||||||||||    
T  7314351 aggagaagaggttttcagtttttgatggagaagagctacacatacgattgccttttgttaggtcct------------ttttttttttaatatactccaa 7314438  T
Q  388 tttgataaaccccaaacatagcgtttgtataaaaacgctaactataaaccccctaataatagcgttcaatgcaaagcgctatctttgcgaagctaagtaa 487  Q
    |||||||||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7314439 tttgataaacaccaaacatagcgtttgtataaaaacgctaactacc--ccccctaataatagcgttcattgcaaagcgctatctttgcgaagctaagtaa 7314536  T
Q  488 tagcgtttac----ctaaaagcgctatttaattcatattttttagtagcttttc-ttagcgctcga-caaaaaggctattaaaggcatgtatgttgcctt 581  Q
     |||||||||    |||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  7314537 cagcgtttacctagctaaaagcgctatttaatccatattttttagtagcttttctttagcgctcgaccaaaaaggttattaaaggcatgtatgttgcctt 7314636  T
Q  582 tttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaa 636  Q
    ||||||| |||||||||||||| |||||||||| || || |||||||||||||||    
T  7314637 tttaatatcatttatatagaaaagctattaaaa-ttgtgttattaaaagctaaaa 7314690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 7314136 - 7314357
Alignment:
Q  31 ggtttgcggaggatgacatattcgcggagaaaaatcaacgcttttgtgattagtgatgcagatcgatgggttttaacggcggattggtt----------- 119  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||               
T  7314136 ggtttgcggaggatgacatattcgcggagaaagatcaacgattttgtgattagtgatgcagatcgatgggttttaacggtggatgggttcgagggaagga 7314235  T
Q  120 ------cgcggtgggagaaaagatagggttcgatgcgggaagatggggtggagtgagagaaggaagagagagatatatacttgaggtttggagacggcgc 213  Q
          |||||||| |||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7314236 tgggttcgcggtggaagaaaagatagggttccatgcggtaagatgggttggagtgagagaaggaagagagagatatatacttgcggtttggagacggcgc 7314335  T
Q  214 gcggtgttgtggtggagaagaa 235  Q
    ||||| ||||||||||| ||||    
T  7314336 gcggttttgtggtggaggagaa 7314357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 388 - 645
Target Start/End: Complemental strand, 14128846 - 14128592
Alignment:
Q  388 tttgataaaccccaaacatagcgtttgtataaaaacgctaactataaaccccctaataatagcgttcaatgcaaagcgctatctttgcgaagctaagtaa 487  Q
    |||||||||||||||||||||||||| ||      |||||||||||  | | | ||||||||||||||||||| | |||| ||| |||||||||||||||    
T  14128846 tttgataaaccccaaacatagcgttttta------cgctaactataccctctccaataatagcgttcaatgcataccgctgtctctgcgaagctaagtaa 14128753  T
Q  488 tagcgtttacctaaaagcgctatttaattcatattttttagtagcttttcttagcgctcga-caaaaaggctattaaaggcatgtatgttgccttttt-- 584  Q
    || | ||| |||||||||||||| |||| ||||||||||||||| ||||||  |||| | | |||||| ||||| |||||||||| ||||||||||||      
T  14128752 tatcattttcctaaaagcgctatctaatccatattttttagtagtttttctgggcgcccaaccaaaaatgctataaaaggcatgtgtgttgcctttttat 14128653  T
Q  585 -aatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtag 645  Q
     |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||    
T  14128652 aaatagcatttatatagaaacgctattaaaattgc-gctattaaaaactaaaattgtagtag 14128592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 574 - 648
Target Start/End: Complemental strand, 16230318 - 16230245
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    ||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||| |||||||| |||||||    
T  16230318 gttgcatttttaatagcatttatctagaaacgctattaaaa-ttgtgctattaaaagccaaaattgtggtagtga 16230245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 647
Target Start/End: Complemental strand, 6813918 - 6813846
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtg 647  Q
    ||||| ||||||||||| |||||  | |||||||||||||||| | |||||||||||| |||||||| ||||||    
T  6813918 gttgcatttttaatagcttttatccataaacgctattaaaattgc-gctattaaaagccaaaattgtggtagtg 6813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 580 - 648
Target Start/End: Original strand, 4685774 - 4685841
Alignment:
Q  580 tttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    ||||||| ||| ||||| | |||||||||||||| || | |||||||||| | ||||||||||||||||    
T  4685774 tttttaacagcgtttatgttgaaacgctattaaatttgc-gctattaaaaaccaaaattgtagtagtga 4685841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 575 - 647
Target Start/End: Original strand, 25043282 - 25043353
Alignment:
Q  575 ttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtg 647  Q
    |||| ||| ||||||| ||||| ||||||||||||| |||||| ||||||||||  | |||||||| ||||||    
T  25043282 ttgcatttgtaatagcgtttatgtagaaacgctatt-aaatttgtgctattaaagaccaaaattgtggtagtg 25043353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 113; Significance: 7e-57; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 509 - 648
Target Start/End: Complemental strand, 47899 - 47760
Alignment:
Q  509 atttaattcatattttttagtagcttttcttagcgctcgac-aaaaaggctattaaaggcatgtatgttgcctttttaatagcatttatatagaaacgct 607  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47899 atttaatccatattttttagtagcttttcttagcgctcgaccaaaaaggctattaaaagcatgtatgttgcctttttaatagcatttatatagaaacgct 47800  T
Q  608 attaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  47799 attaaaa-ttgtgctattaaaagctaaaattgtagtagtga 47760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 7e-57; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 509 - 648
Target Start/End: Complemental strand, 28247737 - 28247598
Alignment:
Q  509 atttaattcatattttttagtagcttttcttagcgctcgac-aaaaaggctattaaaggcatgtatgttgcctttttaatagcatttatatagaaacgct 607  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28247737 atttaatccatattttttagtagcttttcttagcgctcgaccaaaaaggctattaaaagcatgtatgttgcctttttaatagcatttatatagaaacgct 28247638  T
Q  608 attaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  28247637 attaaaa-ttgtgctattaaaagctaaaattgtagtagtga 28247598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 575 - 648
Target Start/End: Original strand, 33292453 - 33292525
Alignment:
Q  575 ttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    |||| |||||||||||||||||  | |||||||||||||| || ||||||||||||| |||||||| |||||||    
T  33292453 ttgcatttttaatagcatttatccaaaaacgctattaaaa-ttgtgctattaaaagccaaaattgtggtagtga 33292525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 648
Target Start/End: Original strand, 22474554 - 22474621
Alignment:
Q  580 tttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    ||||||||||| |||||  |||||||||||||||| || ||||||||||||| |||||||| |||||||    
T  22474554 tttttaatagcttttatgcagaaacgctattaaaa-ttgtgctattaaaagccaaaattgtggtagtga 22474621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 640
Target Start/End: Complemental strand, 20511905 - 20511840
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgt 640  Q
    ||||| |||||||||||||||||  | |||||||||||||| || ||||||||||||| ||||||||    
T  20511905 gttgcatttttaatagcatttattcaaaaacgctattaaaa-ttatgctattaaaagccaaaattgt 20511840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 648
Target Start/End: Original strand, 16729750 - 16729822
Alignment:
Q  575 ttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    |||| ||||||||||| |||||  | |||||||||||||| || ||||||||||||| |||||||| |||||||    
T  16729750 ttgcatttttaatagcttttatccaaaaacgctattaaaa-ttgtgctattaaaagccaaaattgtggtagtga 16729822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 388 - 645
Target Start/End: Complemental strand, 3048 - 2794
Alignment:
Q  388 tttgataaaccccaaacatagcgtttgtataaaaacgctaactataaaccccctaataatagcgttcaatgcaaagcgctatctttgcgaagctaagtaa 487  Q
    |||||||||||||||||||||||||| ||      |||||||||||  | | | ||||||||||||||||||| | |||| ||| |||||||||||||||    
T  3048 tttgataaaccccaaacatagcgttttta------cgctaactataccctctccaataatagcgttcaatgcataccgctgtctctgcgaagctaagtaa 2955  T
Q  488 tagcgtttacctaaaagcgctatttaattcatattttttagtagcttttcttagcgctcga-caaaaaggctattaaaggcatgtatgttgccttttt-- 584  Q
    || | ||| |||||||||||||| |||| ||||||||||||||| ||||||  |||| | | |||||| ||||| |||||||||| ||||||||||||      
T  2954 tatcattttcctaaaagcgctatctaatccatattttttagtagtttttctgggcgcccaaccaaaaatgctataaaaggcatgtgtgttgcctttttat 2855  T
Q  585 -aatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtag 645  Q
     |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||    
T  2854 aaatagcatttatatagaaacgctattaaaattgc-gctattaaaaactaaaattgtagtag 2794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 4e-52; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 388 - 647
Target Start/End: Complemental strand, 12814242 - 12813983
Alignment:
Q  388 tttgataaaccccaaacatagcgtttgtataaaaacgctaactataaaccccctaataatagcgttcaatgcaaagcgctatctttgcgaagctaagtaa 487  Q
    |||||||| |||||||||||| ||||  |||||||| |||||||||  ||  | | |||||||||||| | | |||||||||||||||||| ||||||||    
T  12814242 tttgataatccccaaacatagtgtttacataaaaacactaactataccccatccagtaatagcgttcattacgaagcgctatctttgcgaaactaagtaa 12814143  T
Q  488 tagcgtttacctaaaagcgctatttaattcatattttttagtagcttttcttagcgctcga-caaaaaggctattaaaggcatgtatgttgcctttttaa 586  Q
    |||||||| ||||||| ||||||   || ||||||||| ||||| |||||||||||  | | |||||| ||||| |||||||||| ||||||||||||||    
T  12814142 tagcgttttcctaaaatcgctatcgcatccatatttttcagtagtttttcttagcgaccaaccaaaaacgctataaaaggcatgtgtgttgcctttttaa 12814043  T
Q  587 tagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtg 647  Q
    ||||||||||||| ||||||||||| | || | |||||||||||| |||||||| ||||||    
T  12814042 tagcatttatataaaaacgctattatacttgc-gctattaaaagccaaaattgtggtagtg 12813983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 640
Target Start/End: Complemental strand, 37941504 - 37941439
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgt 640  Q
    ||||| |||||||||||||||||  |||||||||||||||| || ||||||||||||| ||||||||    
T  37941504 gttgcatttttaatagcatttatccagaaacgctattaaaa-ttatgctattaaaagccaaaattgt 37941439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 575 - 647
Target Start/End: Original strand, 49947185 - 49947256
Alignment:
Q  575 ttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtg 647  Q
    |||| ||||||||||||||||| || |||||||||||||| || ||||||||||||  |||||||| ||||||    
T  49947185 ttgcatttttaatagcatttatctaaaaacgctattaaaa-ttgtgctattaaaagacaaaattgtggtagtg 49947256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 646
Target Start/End: Complemental strand, 45837725 - 45837654
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagt 646  Q
    ||||| |||||||||||||||||  ||||  |||||||||| || ||||||||||||| |||||||| |||||    
T  45837725 gttgcatttttaatagcatttatccagaagggctattaaaa-ttgtgctattaaaagccaaaattgtggtagt 45837654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 580 - 648
Target Start/End: Original strand, 25040357 - 25040424
Alignment:
Q  580 tttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    ||||||||||| |||||  | ||| |||||||||||| | |||||||||| | ||||||||||||||||    
T  25040357 tttttaatagcgtttatccataaaagctattaaaattgc-gctattaaaaaccaaaattgtagtagtga 25040424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 401 - 648
Target Start/End: Complemental strand, 31309026 - 31308780
Alignment:
Q  401 aaacatagcgtttgtataaaaacgctaactataaaccccctaataatagcgttcaatgcaaagcgctatctttgcgaagctaagtaatagcgtttaccta 500  Q
    |||||||||||||| |||||| ||||| ||| |||| | | ||||||||||||  ||  ||||||||| | || | |  |||| ||||||||||| ||||    
T  31309026 aaacatagcgtttggataaaa-cgctatctaaaaactctccaataatagcgtttgataaaaagcgctaacgttccaatactaaataatagcgttttccta 31308928  T
Q  501 aaagcgctatttaattcatattttttagtagcttttcttagcgctcgacaaaaag-gctattaaaggcatgtatgttgcctttttaatagcatttatata 599  Q
    |||||| ||||||| |||| ||||| | ||| || ||||||||| |||| ||||| |||||  |||| || | ||||||||||| |||||| ||||| ||    
T  31308927 aaagcgatatttaactcatgtttttgactagtttatcttagcgcccgaccaaaagtgctatagaaggtatctgtgttgccttttcaatagcgtttatgta 31308828  T
Q  600 gaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
     |||||||||| ||||||  |||||||||||| ||||||||||||||||    
T  31308827 aaaacgctatt-aaatttgcgctattaaaagccaaaattgtagtagtga 31308780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 648
Target Start/End: Complemental strand, 32664446 - 32664373
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    ||||| |||||||||||||||||  |||||||||||||||| |  ||||||||||||| |||||||| |||||||    
T  32664446 gttgcatttttaatagcatttatccagaaacgctattaaaa-taatgctattaaaagccaaaattgtggtagtga 32664373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 574 - 647
Target Start/End: Original strand, 17943245 - 17943317
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtg 647  Q
    ||||| |||||||||||||||||  |||||||||||||||| |  ||||||||||||| |||||||| ||||||    
T  17943245 gttgcatttttaatagcatttatccagaaacgctattaaaa-taatgctattaaaagccaaaattgtggtagtg 17943317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 574 - 647
Target Start/End: Complemental strand, 20027734 - 20027662
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtg 647  Q
    ||||| |||||||||||||||||  | |||||||||||||||| | |||||||||||| |||||||| ||||||    
T  20027734 gttgcatttttaatagcatttattcaaaaacgctattaaaattac-gctattaaaagccaaaattgtggtagtg 20027662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 575 - 647
Target Start/End: Original strand, 17009949 - 17010020
Alignment:
Q  575 ttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtg 647  Q
    |||| |||||||||||||||||  | |||||||||||||| || ||||||||||||| |||||||| ||||||    
T  17009949 ttgcatttttaatagcatttatccaaaaacgctattaaaa-ttgtgctattaaaagccaaaattgtggtagtg 17010020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 648
Target Start/End: Complemental strand, 36517014 - 36516941
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    |||||||||||||||||||||||  | ||  |||||||||| || |||||||||| || ||||||||||||||||    
T  36517014 gttgcctttttaatagcatttatccataagtgctattaaaa-ttgtgctattaaaggccaaaattgtagtagtga 36516941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 647
Target Start/End: Complemental strand, 8376138 - 8376066
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtg 647  Q
    ||||| |||||||||||||||||  | |||||||||||||| || ||||||||||| | |||||||| ||||||    
T  8376138 gttgcatttttaatagcatttattcaaaaacgctattaaaa-ttgtgctattaaaatccaaaattgtggtagtg 8376066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 648 - 694
Target Start/End: Complemental strand, 11834087 - 11834041
Alignment:
Q  648 accatagaccagtgttgtaaacaaaagcttttatatattcccatatt 694  Q
    ||||| ||||| ||||||  |||||||||||||||||||||||||||    
T  11834087 accattgaccactgttgttcacaaaagcttttatatattcccatatt 11834041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 653
Target Start/End: Complemental strand, 14481758 - 14481686
Alignment:
Q  580 tttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtgaccata 653  Q
    ||||||||||| ||||| || |||||||||||||| || |||||||||| || |||||||| ||| ||| ||||    
T  14481758 tttttaatagcttttatgtacaaacgctattaaaa-ttgtgctattaaaggccaaaattgtggtaatgaacata 14481686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 485 - 647
Target Start/End: Original strand, 5562478 - 5562640
Alignment:
Q  485 taatagcgtttacctaaaagcgctatttaattcatattttttagtagcttttcttagcgctcgacaaaaag-gctattaaaggcatgtatgttgcctttt 583  Q
    ||||||||||| |||||||||| ||||||| |||| ||||| | ||| || ||||||||| |||| ||||| |||||  |||| || | |||||||||||    
T  5562478 taatagcgttttcctaaaagcgatatttaactcatgtttttgactagtttatcttagcgcccgaccaaaagtgctatagaaggtatctgtgttgcctttt 5562577  T
Q  584 taatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtg 647  Q
    ||||||| ||||| || |||||||||| ||||||  |||||||||||| |||||||||||||||    
T  5562578 taatagcgtttatgtaaaaacgctatt-aaatttgcgctattaaaagccaaaattgtagtagtg 5562640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 575 - 648
Target Start/End: Original strand, 33737098 - 33737170
Alignment:
Q  575 ttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    |||| ||||||||||||||||| ||||||||||||||||| || |||||||||| || |||||||| |||||||    
T  33737098 ttgcatttttaatagcatttatgtagaaacgctattaaaa-ttgtgctattaaaggccaaaattgtggtagtga 33737170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 575 - 648
Target Start/End: Complemental strand, 12531276 - 12531204
Alignment:
Q  575 ttgcctttttaatagcatttatatagaaacgctattaaaatttc-tgctattaaaagctaaaattgtagtagtga 648  Q
    ||||||||||||||||||||||| ||||||| ||||  | | || ||||||||| ||||||||||||||||||||    
T  12531276 ttgcctttttaatagcatttatagagaaacgatatt--attgtcgtgctattaagagctaaaattgtagtagtga 12531204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 654
Target Start/End: Original strand, 12630218 - 12630296
Alignment:
Q  575 ttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtgaccatag 654  Q
    |||| |||||||||||| ||||  | |||||||||||||| || ||||||||||||  |||||||| |||||| ||||||    
T  12630218 ttgcatttttaatagcacttatccaaaaacgctattaaaa-ttgtgctattaaaagtcaaaattgtggtagtggccatag 12630296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 389 - 510
Target Start/End: Complemental strand, 4611042 - 4610919
Alignment:
Q  389 ttgataaacccc-aaacatagcgtttgtataaaaacgctaactataaacccc-ctaataatagcgttcaatgcaaagcgctatctttgcgaagctaagta 486  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||  | |  | |||||||||||||| |   ||| ||||||||| ||||||||||||    
T  4611042 ttgataaacccccaaacatagcgtttggataaaaacgctaactatacccacatccaataatagcgttcattaagaagtgctatctttccgaagctaagta 4610943  T
Q  487 atagcgtttacctaaaagcgctat 510  Q
    ||||||||| ||||||||||||||    
T  4610942 atagcgttttcctaaaagcgctat 4610919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 574 - 647
Target Start/End: Original strand, 15103123 - 15103195
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtg 647  Q
    ||||| |||||||||||||||||  |||||||||||||||| || ||||||||||||| |||||||| ||||||    
T  15103123 gttgcatttttaatagcatttatccagaaacgctattaaaa-ttgtgctattaaaagccaaaattgtggtagtg 15103195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 648
Target Start/End: Complemental strand, 20129512 - 20129440
Alignment:
Q  575 ttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    |||| ||||||||||||||||| || ||| |||||||||| || ||||||||||||| |||||| | |||||||    
T  20129512 ttgcatttttaatagcatttatctataaaagctattaaaa-ttgtgctattaaaagccaaaattatggtagtga 20129440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 574 - 647
Target Start/End: Complemental strand, 9881 - 9809
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtg 647  Q
    ||||| |||||||||||||||||  |||||||||||||||| || ||||||||||||| |||||||| ||||||    
T  9881 gttgcatttttaatagcatttatccagaaacgctattaaaa-ttgtgctattaaaagccaaaattgtggtagtg 9809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 571 - 647
Target Start/End: Complemental strand, 20571537 - 20571462
Alignment:
Q  571 tatgttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtg 647  Q
    |||||||||||| ||||||| ||||| || |||||||||||||| | ||||||| |||||| |||||||||||||||    
T  20571537 tatgttgcctttataatagcgtttatgtaaaaacgctattaaaa-tactgctataaaaagccaaaattgtagtagtg 20571462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 575 - 647
Target Start/End: Original strand, 24501711 - 24501782
Alignment:
Q  575 ttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtg 647  Q
    |||| |||||||||||||||||  | |||||||||||||| || ||||||||||||| |||||||| ||||||    
T  24501711 ttgcatttttaatagcatttatccaaaaacgctattaaaa-ttgtgctattaaaagccaaaattgtggtagtg 24501782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 648
Target Start/End: Original strand, 14154121 - 14154195
Alignment:
Q  573 tgttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    |||| ||||| ||||||| ||||| ||||||||||||||||| | ||||||| |||||| |||||||| |||||||    
T  14154121 tgtttcctttataatagcgtttatgtagaaacgctattaaaa-tactgctataaaaagccaaaattgtggtagtga 14154195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 648
Target Start/End: Original strand, 23925803 - 23925875
Alignment:
Q  575 ttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    |||| ||||| |||||||||||  | |||||||||||||| || ||||||||||||| |||||||| |||||||    
T  23925803 ttgcatttttcatagcatttatccataaacgctattaaaa-ttgtgctattaaaagccaaaattgtggtagtga 23925875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 649
Target Start/End: Original strand, 11506375 - 11506449
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtgac 649  Q
    ||||| |||||||||| |||||| ||||| | ||||||||| |||||||||| |||  ||||||||| ||||||||    
T  11506375 gttgcatttttaatagtatttatctagaagctctattaaaa-ttctgctattgaaatttaaaattgtggtagtgac 11506449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 649
Target Start/End: Original strand, 11513098 - 11513172
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtgac 649  Q
    ||||| |||||||||| |||||| ||||| | ||||||||| |||||||||| |||  ||||||||| ||||||||    
T  11513098 gttgcatttttaatagtatttatctagaagctctattaaaa-ttctgctattgaaatttaaaattgtggtagtgac 11513172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 648
Target Start/End: Original strand, 27289101 - 27289173
Alignment:
Q  575 ttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    |||| |||||||||||||||||  | ||| | ||||||||||  ||||||||||||| |||||||| |||||||    
T  27289101 ttgcatttttaatagcatttatccaaaaatgttattaaaattg-tgctattaaaagccaaaattgtggtagtga 27289173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 646
Target Start/End: Complemental strand, 17176109 - 17176038
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagt 646  Q
    ||||| |||||||||||||||||  |||||||||||||||| || ||||||||||||| |||||||| |||||    
T  17176109 gttgcatttttaatagcatttatccagaaacgctattaaaa-ttatgctattaaaagccaaaattgtggtagt 17176038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 574 - 645
Target Start/End: Complemental strand, 41944103 - 41944033
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtag 645  Q
    ||||||| |||||||||||||||  | ||||| ||||||||||  |||||||||||||||||||||| ||||    
T  41944103 gttgcctatttaatagcatttattcataaacgttattaaaattg-tgctattaaaagctaaaattgtggtag 41944033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 648
Target Start/End: Complemental strand, 32848 - 32775
Alignment:
Q  574 gttgcctttttaatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtga 648  Q
    ||||| |||||||||||||||||  | |||||||||||||| || ||||||||||||| |||||||| |||||||    
T  32848 gttgcatttttaatagcatttattcaaaaacgctattaaaa-ttatgctattaaaagccaaaattgtggtagtga 32775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 584 - 647
Target Start/End: Original strand, 12297 - 12359
Alignment:
Q  584 taatagcatttatatagaaacgctattaaaatttctgctattaaaagctaaaattgtagtagtg 647  Q
    ||||||| ||||||||||||||||||||||| | | ||||| |||||| |||||||||||||||    
T  12297 taatagcgtttatatagaaacgctattaaaa-tgccgctataaaaagccaaaattgtagtagtg 12359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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