View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0840_high_13 (Length: 263)

Name: NF0840_high_13
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0840_high_13
NF0840_high_13
[»] chr8 (1 HSPs)
chr8 (37-223)||(388383-388569)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 37 - 223
Target Start/End: Original strand, 388383 - 388569
Alignment:
37 catcaccatggtcaccactataaaatcctatttttatatcagcgaaaccatagtcctttgattcgacgaaactaactggaataactgaactccatctaga 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
388383 catcaccatggtcaccactataaaatcctatttttatatcagcgaaaccatagtcctctgattcgacgaaactaactggaataactgaactccatctaga 388482  T
137 gaaagctcgtttgaatgcttctcttatctcttgtatgctcaagttatgaatcatgtagtcacttgagaagccataggttagtgtcat 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
388483 gaaagctcgtttgaatgcttctcttatctcttgtatgctcaagttatgaatcatgtagtcacttgagaagccataggttagtgtcat 388569  T

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