View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0840_high_14 (Length: 263)
Name: NF0840_high_14
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_high_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 263
Target Start/End: Complemental strand, 43867550 - 43867317
Alignment:
| Q |
30 |
taacaaggggcgaaaaacttttaagtttggatcaatgaagtccgagtgcagatatgtctcgcgctagtatgtccatgagctatagttcaaccgataaaaa |
129 |
Q |
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| T |
43867550 |
taacaaggggtgaaaaacttttaagtttggatcaatgaagtccgagtgcagatatgtctcgcgctagtatgtccatgagctatagttcaactgataaaaa |
43867451 |
T |
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| Q |
130 |
tgtcgaattgttaagttggatgctatggccggggctggaactccggcaatctcgactcctccacttatgtgtttgagttttcaatagctactgacatttc |
229 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867450 |
tgtcgaattgttaagttggatgctatggccgcggctggaactccggcaatctcgactcctccacttatgtgtttgagttttcaatagctactgacatttc |
43867351 |
T |
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| Q |
230 |
gtctatccactaaataaattacggagggagtata |
263 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
43867350 |
gtctatccactaaataaattacggagggagtata |
43867317 |
T |
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