View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0840_high_15 (Length: 259)
Name: NF0840_high_15
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_high_15 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 2430401 - 2430641
Alignment:
| Q |
19 |
ttatactcatggttctttaacttaacttcatataagtatttggtcttctatattttgttcacgtgattttggtccattgacaattgacatatgaattatc |
118 |
Q |
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| T |
2430401 |
ttatactcatggttctttaacttaacttcatataagtatttggtcttttatattttgttcacgtgattttggtccattgacaattgacatatgaattatc |
2430500 |
T |
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| Q |
119 |
aagctccaaatctagattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatcatacatttaaaacttgaat |
218 |
Q |
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| T |
2430501 |
aagctccaaatctagattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatcatagatttaaaagttgaat |
2430600 |
T |
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| Q |
219 |
attcatatcaaatggatcaaaagggcaaaaataatgtgaaa |
259 |
Q |
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| T |
2430601 |
attcatatcaaatggatcaaaagggcaaaaataatgtgaaa |
2430641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 2434040 - 2434104
Alignment:
| Q |
18 |
attatactcatggttctttaacttaacttcatataagtatttggtcttctatattttgttcacgt |
82 |
Q |
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| T |
2434040 |
attatacttgtggttctttaacttaacttcagataagtatttggtcttttatatgtttttcacgt |
2434104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 8358591 - 8358469
Alignment:
| Q |
105 |
acatatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatcatac |
203 |
Q |
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| T |
8358591 |
acatatgaattttcaagcttcaaatctaagattcatatgcaaacatatatgaaagaccgtaagtttaaagattaagaggtcataagaaaaaaaatcatgg |
8358492 |
T |
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| Q |
204 |
atttaaaacttgaatattcatat |
226 |
Q |
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| T |
8358491 |
aattaaagcttgaaaattcatat |
8358469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 22399105 - 22399247
Alignment:
| Q |
109 |
atgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatc-atacatt |
206 |
Q |
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||||||| ||||||| |||||||| |||||| ||| |||| | | ||||||||||||||| | || ||||||||||||| || || |||| | ||| ||| |
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| T |
22399105 |
atgaattttcaagcttcaaatctaagattcaaatgtaaacataggtgaaagaccataaattttaaaactgagaggtcactagaaattaaaacaatatatt |
22399204 |
T |
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| Q |
207 |
taaaacttgaatattcatat-caaatggatcaaaagggcaaaa |
248 |
Q |
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| T |
22399205 |
tgaagcttgaaaattcatatgcaaatgtaccaaaagagcaaaa |
22399247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 474775 - 474683
Alignment:
| Q |
106 |
catatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaa |
197 |
Q |
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| T |
474775 |
catatgaattttcaagcttcaaatttaagattcatatgcaaacatgggtgaaggaccatagatttgaagactgagaactcacaggaaaataaa |
474683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 9253208 - 9253331
Alignment:
| Q |
106 |
catatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaag--gaaataaatcata |
202 |
Q |
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|||||||||| |||||| |||||||| |||| |||| |||| | |||||||||||||| || | |||| ||||||| || || ||| |||||||| |
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| T |
9253208 |
catatgaattttcaagcatcaaatctaagatttatatcaaaacatagatgaaagaccatatatttgaagattgagaggccatgagaaaaaaaaaatcata |
9253307 |
T |
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| Q |
203 |
catttaaaacttgaatattcatat |
226 |
Q |
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||||||| ||||||||||||||| |
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| T |
9253308 |
gatttaaagcttgaatattcatat |
9253331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 45682541 - 45682600
Alignment:
| Q |
106 |
catatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccata |
164 |
Q |
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| T |
45682541 |
catatgaattttcaagctttaaatataagattcatatgcaaacatggatgaaagaccata |
45682600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 41317110 - 41317018
Alignment:
| Q |
106 |
catatgaattatcaagctccaaatctaga-ttcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaa |
197 |
Q |
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|||||| ||| ||||||| ||||||| | |||||| |||||| || ||||||||||||| || | |||| || ||||||||||| ||||||| |
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| T |
41317110 |
catatgtattttcaagctttaaatctaaaattcataggcaaacatgaatgaaagaccatagatttgaagattgggaggtcacaagaaaataaa |
41317018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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