View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0840_high_4 (Length: 464)
Name: NF0840_high_4
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 5 - 435
Target Start/End: Original strand, 41349888 - 41350318
Alignment:
| Q |
5 |
cagaaaagaaagttattaggacactgttgatgtgtttcttctacccagtgaccctgcaagcattctagtactcctctatgatctccttccgcatccatgt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41349888 |
cagaaaagaaagttattaggacactgttgatgtgtttcttctacccagtgaccctgcaagcattctagtactcctctatgatctccttcctcatccatgt |
41349987 |
T |
|
| Q |
105 |
tttccacattctctatcaaaggtggtagataattcattgtgtccattgaaaaagttgttgatattggaggaggtagtgatgactggacttgattccatgt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41349988 |
tttccacattctctatcaaaggtggtagataattcattgtgtccattgaaaaagttgttgatattggaggaggtagtgatgactggacttgattccatgt |
41350087 |
T |
|
| Q |
205 |
ttcagagctcaaaccatttatagaatcctggaagtattgatcggtttgcagattacaactgctttctgttgttgttccatgaagtgaatcactagactca |
304 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41350088 |
ttcagagctcaaaccatttatagaatcttggaagtattgatcggtttgcagattacaactgctttctgttgttgttccatgaagtgaatcactaggctca |
41350187 |
T |
|
| Q |
305 |
aacatgaaaatagggcatgtgggagaaaacaaggttgtttctggtggttttgctgttgttatattctcttggttggcaaactggtctaattttatattag |
404 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41350188 |
aacataaaaatagggcatgtgggagaaaacaaggttgtttctggtggttttgctgttgttatattctcttggttggcaaactggtctaattttatattag |
41350287 |
T |
|
| Q |
405 |
aataattataattgaggtgggaatgatgaac |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
41350288 |
aataattataattgaggtgggaatgatgaac |
41350318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 246 times since January 2019
Visitors: 6127