View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0840_high_8 (Length: 329)

Name: NF0840_high_8
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0840_high_8
NF0840_high_8
[»] chr6 (1 HSPs)
chr6 (52-316)||(1788332-1788596)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 52 - 316
Target Start/End: Complemental strand, 1788596 - 1788332
Alignment:
52 taaacaatttccaaactaagattacaaaacttgagcttaataacaatcatttcatggaccaattggaatactaagatcttctagagtttctttagtaaaa 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1788596 taaacaatttccaaactaagattacaaaacttgagcttaataacaatcatttcatggaccaattggaatactaagatcttctagagtttctttagtaaaa 1788497  T
152 ttcttccttccctttgaaatcaataaggcctcttctagtgttttgacaacttgttccatggatggtctttgttggtcaagggatgtgcatgatagagcca 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1788496 ttcttccttccctttgaaatcaataaggcctcttctagtgttttgacaacttgttccatggatggtctttgttggtcaagggatgtgcatgatagagcca 1788397  T
252 attgaagtgtaaaatcaaatgcttcttcagaataatttccttcaagtctaggatcagcaaattct 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1788396 attgaagtgtaaaatcaaatgcttcttcagaataatttccttcaagtctaggatcagcaaattct 1788332  T

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