View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0840_low_1 (Length: 1151)
Name: NF0840_low_1
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 537 - 1049
Target Start/End: Original strand, 12157813 - 12158313
Alignment:
| Q |
537 |
atatcaatatacgtgtgaaaacaaaaatctaatacgatcaaaatatcgacatacctgtctaaactttgtagttccctcgactgcctcagtaataaattca |
636 |
Q |
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| T |
12157813 |
atatcaatagacgtgtgaaaacaaaaatctaatacgatcaaaatatcatcatacatgtttaaactttgtagtatccttgactgcctctgtaataaattca |
12157912 |
T |
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| Q |
637 |
agtgaaaagatatttgtgagcttggaaccataaccactacctttgagaccataaacgccatctccataatgcaccataggaacaccgcctcccttaatgt |
736 |
Q |
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| T |
12157913 |
agtgaaaagatatttatgagcctggaaccataaccactacctttgagatcataaacgccatctccattatccaccatagggacaccgcctcccttaatgt |
12158012 |
T |
|
| Q |
737 |
aaactgatatcttactctctttggcatcaatatcaactttcacacattccatcaatgatgaatttctcatataagaatcaaagatgttaagcagaatttc |
836 |
Q |
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| T |
12158013 |
aaattgataccttactcactttggcatcaatatcaactttcacacattccatcaatgatggatttctcttataacaatcaaagatgttaaccata----- |
12158107 |
T |
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| Q |
837 |
atcaaagattttttgaagtcctggtacaaaagaaattgaacgcagaaccattcgatcgttttcgtaaacccaaagattttgtttcttcatttgtgttgat |
936 |
Q |
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| T |
12158108 |
-------attttatgaagtcctggtacaaaataaattgaacgcagaaccattcagtcgtttttgtaaacctagatattttgtgtcttcatctgtgtggat |
12158200 |
T |
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| Q |
937 |
cctatgtaggcgtcaggactggcaataacgccttctacgtcgatttcttccgtgggtgaagtttccatgacaggtatttgcttgtgctcgtaggtaacac |
1036 |
Q |
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| T |
12158201 |
catatgtaggcgttaggaccgacaagaacatcttctacgtcgatttcttccgtgtgtgaagtttccatgacaagtattttcttgtgctcataggtaacac |
12158300 |
T |
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| Q |
1037 |
aagtgcacctgtg |
1049 |
Q |
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| T |
12158301 |
aaatgcacctgtg |
12158313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 910 - 1078
Target Start/End: Complemental strand, 12155636 - 12155468
Alignment:
| Q |
910 |
agattttgtttcttcatttgtgttgatcctatgtaggcgtcaggactggcaataacgccttctacgtcgatttcttccgtgggtgaagtttccatgacag |
1009 |
Q |
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| T |
12155636 |
agattttgtgtcttcatttgtgttgatcctatgtaggcatcaaaaccggcaagaacgtcttctacgtcgatttcttccgtgtttgaagtttccatgacaa |
12155537 |
T |
|
| Q |
1010 |
gtatttgcttgtgctcgtaggtaacacaagtgcacctgtgaagttgaagtttcaatgtcaggtatttct |
1078 |
Q |
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| T |
12155536 |
atatttgtttgtgcttgtaggtaacacaagtgcacctgttaagttgaagtttcaatgacaggtatttct |
12155468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 5e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 5e-90
Query Start/End: Original strand, 30 - 375
Target Start/End: Complemental strand, 32374289 - 32373935
Alignment:
| Q |
30 |
aaaggcccctcttttttacgtctccacctcttcagtcattagcatctgtgaaactacacaagaatatcatcatctnnnnnnnnnnnnnnntat------a |
123 |
Q |
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| T |
32374289 |
aaaggccccccttttttacgcctccatctcttcagtcattagtatctgcgaaactacacaagaatatcatcttctttttctctttatttttatttttata |
32374190 |
T |
|
| Q |
124 |
atatatacttgttctaaaacaaaaaatcctacctgatagaattctagcagcacttgcagtataaatctttattcttttaataatcgtatcaaata---tg |
220 |
Q |
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| T |
32374189 |
atatatacttgttctaagacaaaaaatcctacctcatagaattctagcagcacttgcaatatatatctacattcttttaataatcgtatcaattactatg |
32374090 |
T |
|
| Q |
221 |
tttccagaatgcctttttcnnnnnnnnnnnntaaactatgttttgaggacatttaaacttcttgaagcttttgtagaaaaaacaacttcttgaagctagt |
320 |
Q |
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| T |
32374089 |
tttccagaatgcctttttcaaaaacaaaaaataaactatattttgaggacatttaaacttcttgaagcttttgtaaaaaaaacaacttcttgaagctagt |
32373990 |
T |
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| Q |
321 |
tctattattttccttggtggagacgaggatgatgtgcatatgttaagtggaattt |
375 |
Q |
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| T |
32373989 |
tctattattttccttggtggagacgaggatggtgtgcgtatgttaagtggaattt |
32373935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 428 - 466
Target Start/End: Complemental strand, 32373685 - 32373647
Alignment:
| Q |
428 |
gagagagagttcaaagcacttggtgaaaatgtgttgttt |
466 |
Q |
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| T |
32373685 |
gagagagagttcaaagcacttggtgaaaatgtgctgttt |
32373647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 7499798 - 7499599
Alignment:
| Q |
41 |
ttttttacgtctccacctcttcagtcattagcatctgtgaaactacacaagaatatcatcatctnnnnnnnnnnnnnnntataatatatacttgttctaa |
140 |
Q |
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| T |
7499798 |
tttttaacgtctccacctcttcggtcattagcatgtatgaaactacacaagaatatcattttcttccttttatttttta-ataacatatacatgttctag |
7499700 |
T |
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| Q |
141 |
aacaaaaaatcctacctgatagaattctagcagcacttgcagtataaatctttattcttttaataatcgtatca---aatatgtttccagaatgcctttt |
237 |
Q |
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| T |
7499699 |
aacaaaaaatcttatttgatagaattgtagcagcacttgcaatgtaaatctacattcaattaataatcatatcaattactatgtttctagaatgcctttt |
7499600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 7499557 - 7499489
Alignment:
| Q |
307 |
ttcttgaagctagttctattattttccttggtggagacgaggatgatgtgcatatgttaagtggaattt |
375 |
Q |
| |
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| T |
7499557 |
ttcttgaagctagttctattcttttccttggtagaggctaggatggtgtgtgtatgttaagtggaattt |
7499489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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