View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0840_low_10 (Length: 475)
Name: NF0840_low_10
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_low_10 |
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| [»] scaffold0148 (1 HSPs) |
| | |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 30 - 352
Target Start/End: Complemental strand, 9940614 - 9940291
Alignment:
| Q |
30 |
ccttagagatattgaaggcctaaaaagaaacattcatcattaatatgctcatcaatacatgatagtacaataactannnnnnnatatgaatgt-ttctgg |
128 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
9940614 |
ccttagagatattgagggcctaaaaagaaacattcatcattaatatgctcatcaatacatgatagtacaataactatttttttatatgaatgtcttctgg |
9940515 |
T |
|
| Q |
129 |
gtaaaaagaatgttctaatgaatgaggtattgtatctctttcgcggttcatttacagatataaataatgcttccgtccctaaatatgagatcatttacaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9940514 |
gtaaaaagaatgttctaatgaatgaggtattgtatctctttcgcggttcatttacagatgtaaataatgcttccgtccctaaatatgagatcatttacaa |
9940415 |
T |
|
| Q |
229 |
aaaattctttgtctaaaaatataagaccatctacacatttctagatgtattaattactcgtttctcaactatattggatgtgtatttaggaggctttaga |
328 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9940414 |
aaaattctttgtctaaaaatataagaccatctacacatttctagatgtattaattactcgtttctcaactatattggatgtgtatttaggagattttaga |
9940315 |
T |
|
| Q |
329 |
gatattgaagaggtctaaagagaa |
352 |
Q |
| |
|
||||||| |||||||||||||||| |
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|
| T |
9940314 |
gatattggagaggtctaaagagaa |
9940291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 351 - 452
Target Start/End: Complemental strand, 6954667 - 6954566
Alignment:
| Q |
351 |
aataaataaaagtttagaaagtgaaaatcaaaaaaggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttca |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6954667 |
aataaataaaagtttagaaagtgaaaatcaaaaaaggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttca |
6954568 |
T |
|
| Q |
451 |
at |
452 |
Q |
| |
|
|| |
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|
| T |
6954567 |
at |
6954566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 351 - 452
Target Start/End: Original strand, 18183422 - 18183523
Alignment:
| Q |
351 |
aataaataaaagtttagaaagtgaaaatcaaaaaaggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttca |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18183422 |
aataaataaaagtttagaaagtgaaaatcaaaaaaggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttca |
18183521 |
T |
|
| Q |
451 |
at |
452 |
Q |
| |
|
|| |
|
|
| T |
18183522 |
at |
18183523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 351 - 452
Target Start/End: Original strand, 35160125 - 35160226
Alignment:
| Q |
351 |
aataaataaaagtttagaaagtgaaaatcaaaaaaggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttca |
450 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35160125 |
aataaataaaagtttagaaagtgaaaattaaaaaaggataggtgcagagactcaatggaagctgttctaacaattggagttgacaacatttactctttca |
35160224 |
T |
|
| Q |
451 |
at |
452 |
Q |
| |
|
|| |
|
|
| T |
35160225 |
at |
35160226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 351 - 452
Target Start/End: Complemental strand, 28712725 - 28712624
Alignment:
| Q |
351 |
aataaataaaagtttagaaagtgaaaatcaaaaaaggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttca |
450 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
28712725 |
aataaataaaagtttagaaagtgaaaataaaaaaaggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaatatttactctttca |
28712626 |
T |
|
| Q |
451 |
at |
452 |
Q |
| |
|
|| |
|
|
| T |
28712625 |
at |
28712624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 400 - 452
Target Start/End: Complemental strand, 13622242 - 13622190
Alignment:
| Q |
400 |
actcaatggaagctgttctaacaaatggagttgacaacatttactctttcaat |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13622242 |
actcaatggaagctgttctaacaaatggagttgacaacatttactctttcaat |
13622190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 14194 - 14256
Alignment:
| Q |
351 |
aataaataaaagtttagaaagtgaaaatcaaaaaaggataggtgcagagactcaatggaagct |
413 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||| |
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|
| T |
14194 |
aataaataaaagttcagaaagtgaaaatagaaaaaagataggtgcagagactcgatggaagct |
14256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 431
Target Start/End: Original strand, 246993 - 247042
Alignment:
| Q |
382 |
aaaaggataggtgcagagactcaatggaagctgttctaacaaatggagtt |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
246993 |
aaaaggataggtgcagagactcaatggaagctgttctaacgaatcgagtt |
247042 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 18961277 - 18961362
Alignment:
| Q |
200 |
tccgtccctaaatatgagatcatttacaaaaaattctttgtctaaaaatataagaccatctacacatttctagatgtattaattac |
285 |
Q |
| |
|
||||||||||| | | ||| |||||| ||||||| ||||||| |||||||||||||||||| ||||||||||| ||| ||||| |
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|
| T |
18961277 |
tccgtccctaattgtaagaccatttataaaaaatgctttgtccctaaatataagaccatctaccaatttctagatgcatttattac |
18961362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 301
Target Start/End: Original strand, 30977449 - 30977550
Alignment:
| Q |
200 |
tccgtccctaaatatgagatcatttacaaaaaattctttgtctaaaaatataagaccatctacacatttctagatgtattaattactcgtttctcaacta |
299 |
Q |
| |
|
||||||||||| ||| ||| | |||||||||||| || |||| ||||||||| ||||||| ||||||||||||||| ||||||| ||| |||||| |
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|
| T |
30977449 |
tccgtccctaattataagactacttacaaaaaattattcgtctcttaatataagattatctacaaatttctagatgtatttattactccttttccaacta |
30977548 |
T |
|
| Q |
300 |
ta |
301 |
Q |
| |
|
|| |
|
|
| T |
30977549 |
ta |
30977550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 29217686 - 29217639
Alignment:
| Q |
245 |
aaatataagaccatctacacatttctagatgtattaattactcgtttc |
292 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
29217686 |
aaatataagactatctacaaatttctagatgtatttattactcttttc |
29217639 |
T |
|
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