View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0840_low_13 (Length: 409)
Name: NF0840_low_13
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 29 - 396
Target Start/End: Complemental strand, 2431358 - 2430991
Alignment:
| Q |
29 |
aactacatttattctttgataaaaaataaattctcaatacattcctttatcaaaatcaactgtgttagcttatactgatatctaatgagagtttactatt |
128 |
Q |
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| T |
2431358 |
aactacatttattctatgataaaaaataaattctcaatacattcctttatcaaaatcaactgtgttagcttatactgatatctaatgagagtttactatt |
2431259 |
T |
|
| Q |
129 |
ttgtccaagttaccctacttttttaactgcatcttgatatcaataatatgaaactcagtgtaaaatagttgattctcattagacgcaagcgtaaaactga |
228 |
Q |
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| T |
2431258 |
ttgtccaagttaccctacttttttaactgcatcttgatatcaataatatgaaactcagtgtaaaatagttgattctcattagacgcaagcgtaaaactga |
2431159 |
T |
|
| Q |
229 |
tttacatagaccatgttaaactctaattttatagtacataatatatactttgcctttcgaaataaggcctttgaaatgttaaaataaattgatgaataat |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2431158 |
tttacatagaccatgttaaactctaattttatagtacataatatatactttgcctttcgaaataaggcctttgaaatgttaaaataaattgataaataat |
2431059 |
T |
|
| Q |
329 |
aattgatgaaagagagagcatgacatacaaaaccaggggtgagagcaccaagttctgcagtagtgtct |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2431058 |
aattgatgaaagagagagcatgacatacaaaaccaggggtgagagcaccaagttctgcagtagtgtct |
2430991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 323 - 395
Target Start/End: Complemental strand, 2434645 - 2434572
Alignment:
| Q |
323 |
aataataattgatgaaag-agagagcatgacatacaaaaccaggggtgagagcaccaagttctgcagtagtgtc |
395 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
2434645 |
aataataattgatgaaaggagagagcatgacatacagaaccaggggtgagagcaccaagtcctgcagtagtgtc |
2434572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 1458092 - 1458031
Alignment:
| Q |
334 |
atgaaagagagagcatgacatacaaaaccaggggtgagagcaccaagttctgcagtagtgtc |
395 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||| |
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|
| T |
1458092 |
atgaaagagagagcatgacatacagaaccaggggtgagaccaccaagtcctgcaatagtgtc |
1458031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 2427799 - 2427738
Alignment:
| Q |
334 |
atgaaagagagagcatgacatacaaaaccaggggtgagagcaccaagttctgcagtagtgtc |
395 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||| |
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|
| T |
2427799 |
atgaaagagagagcatgacatacagaaccaggggtgagaccaccaagtcctgcaatagtgtc |
2427738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 2434672 - 2434643
Alignment:
| Q |
85 |
caactgtgttagcttatactgatatctaat |
114 |
Q |
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|||||||||||||||||||||||||||||| |
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|
| T |
2434672 |
caactgtgttagcttatactgatatctaat |
2434643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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