View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0840_low_14 (Length: 409)

Name: NF0840_low_14
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0840_low_14
NF0840_low_14
[»] scaffold0316 (2 HSPs)
scaffold0316 (238-394)||(7086-7244)
scaffold0316 (9-138)||(6856-6986)
[»] chr6 (2 HSPs)
chr6 (238-394)||(11973709-11973867)
chr6 (9-138)||(11973968-11974098)
[»] scaffold0003 (2 HSPs)
scaffold0003 (12-72)||(191679-191739)
scaffold0003 (104-138)||(191774-191808)
[»] chr3 (2 HSPs)
chr3 (12-72)||(11818661-11818721)
chr3 (17-72)||(41758299-41758354)
[»] scaffold0356 (1 HSPs)
scaffold0356 (12-72)||(3979-4039)
[»] chr8 (4 HSPs)
chr8 (12-72)||(14106556-14106616)
chr8 (17-72)||(33856317-33856372)
chr8 (12-80)||(7781791-7781860)
chr8 (12-80)||(7831065-7831134)
[»] chr4 (2 HSPs)
chr4 (17-72)||(31926697-31926752)
chr4 (12-80)||(37525278-37525347)
[»] chr1 (2 HSPs)
chr1 (14-80)||(16046878-16046945)
chr1 (12-72)||(28968383-28968443)
[»] chr5 (1 HSPs)
chr5 (12-80)||(2255797-2255866)


Alignment Details
Target: scaffold0316 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 238 - 394
Target Start/End: Original strand, 7086 - 7244
Alignment:
Q  238 atgaatgtcgaaaataatttgactaatattagttaattgtgaaaacgacatagctcannnnnnnnnn--gttacaaaacgacatagctcatgttgtcaag 335  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||| |||||||||||||||    
T  7086 atgaatgtagaaaataatttgactaatattagttaattgtgaaaacgacatagctctttttttatttttgttacaaaacgacatggctcatgttgtcaag 7185  T
Q  336 taaaatttaacatccttgctttataatcataataaaaatgagacgaaaggtgtactgat 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7186 taaaatttaacatccttgctttataatcataataaaaatgagacgaaaggtgtactgat 7244  T

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Target: scaffold0316; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 6856 - 6986
Alignment:
Q  9 ttctatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaattagaaag-nnnnnnntactcatgannnnnnnaggg 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||       ||||    
T  6856 ttctacggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaattagaaagaaaaaaaatactcatgatttttttaggg 6955  T
Q  108 gaaacaaatactcataatgtacatctttatt 138  Q
    |||||||||||||||||||||||||||||||    
T  6956 gaaacaaatactcataatgtacatctttatt 6986  T

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Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 238 - 394
Target Start/End: Complemental strand, 11973867 - 11973709
Alignment:
Q  238 atgaatgtcgaaaataatttgactaatattagttaattgtgaaaacgacatagctcannnnnnnnnn--gttacaaaacgacatagctcatgttgtcaag 335  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||| |||||||||||||||    
T  11973867 atgaatgtagaaaataatttgactaatattagttaattgtgaaaacgacatagctctttttttatttttgttacaaaacgacatggctcatgttgtcaag 11973768  T
Q  336 taaaatttaacatccttgctttataatcataataaaaatgagacgaaaggtgtactgat 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11973767 taaaatttaacatccttgctttataatcataataaaaatgagacgaaaggtgtactgat 11973709  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 11974098 - 11973968
Alignment:
Q  9 ttctatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaattagaaag-nnnnnnntactcatgannnnnnnaggg 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||        |||||||||       ||||    
T  11974098 ttctatggatgtagtaattgacaattaaattgtacattaattatcaacaatttgtatgattaaattaaaaagaaaaaaaatactcatgatttttttaggg 11973999  T
Q  108 gaaacaaatactcataatgtacatctttatt 138  Q
    ||||||||||||||| |||| ||||||||||    
T  11973998 gaaacaaatactcatgatgtgcatctttatt 11973968  T

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Target: scaffold0003 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 191679 - 191739
Alignment:
Q  12 tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 72  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  191679 tatggatgtagtaattgataattaaattgtacattaattatcaacaatttgtatgattaaa 191739  T

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Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 191774 - 191808
Alignment:
Q  104 aggggaaacaaatactcataatgtacatctttatt 138  Q
    ||||||||||||||||||| |||||||||||||||    
T  191774 aggggaaacaaatactcatgatgtacatctttatt 191808  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 11818661 - 11818721
Alignment:
Q  12 tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 72  Q
    |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||    
T  11818661 tatggatgtagtaattgataattaaattgtacaataattatcaacaatttgtatgattaaa 11818721  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 41758354 - 41758299
Alignment:
Q  17 atgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 72  Q
    ||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||    
T  41758354 atgtagtaattgaaaataaattggtacattaattatcaacaattagtatgattaaa 41758299  T

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Target: scaffold0356 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 4039 - 3979
Alignment:
Q  12 tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 72  Q
    |||||||||||||||||| ||| || ||| ||||||||||||||||||| |||||||||||    
T  4039 tatggatgtagtaattgaaaataaattggaacattaattatcaacaattagtatgattaaa 3979  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 14106616 - 14106556
Alignment:
Q  12 tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 72  Q
    |||||||||||||||||| ||| || ||| ||||||||||||||||||| |||||||||||    
T  14106616 tatggatgtagtaattgaaaataaattggaacattaattatcaacaattagtatgattaaa 14106556  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 33856372 - 33856317
Alignment:
Q  17 atgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 72  Q
    ||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||    
T  33856372 atgtagtaattgaaaataaattggtacattaattatcaacaattagtatgattaaa 33856317  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 7781791 - 7781860
Alignment:
Q  12 tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgatt-aaattagaaag 80  Q
    |||||||  ||||||||| ||| |||||||||||||||| |||| ||||| ||||||| |||||||||||    
T  7781791 tatggatagagtaattgaaaataaaatggtacattaattttcaaaaatttatatgattaaaattagaaag 7781860  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 7831065 - 7831134
Alignment:
Q  12 tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgatt-aaattagaaag 80  Q
    |||||||  ||||||||| ||| |||||||||||||||| |||| ||||| ||||||| |||||||||||    
T  7831065 tatggatagagtaattgaaaataaaatggtacattaattttcaaaaatttatatgattaaaattagaaag 7831134  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 31926697 - 31926752
Alignment:
Q  17 atgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 72  Q
    ||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||    
T  31926697 atgtagtaattgaaaataaattggtacattaattatcaacaattagtatgattaaa 31926752  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 37525347 - 37525278
Alignment:
Q  12 tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgatt-aaattagaaag 80  Q
    ||||||| |||||||||| ||| |||| ||||||||||| |||| ||||| ||||||| |||||||||||    
T  37525347 tatggatatagtaattgaaaataaaattgtacattaattttcaaaaatttatatgattaaaattagaaag 37525278  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 16046878 - 16046945
Alignment:
Q  14 tggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgatt-aaattagaaag 80  Q
    ||||||||||||||||  || || ||||||||||||||||||||||| |||||||| |||||||||||    
T  16046878 tggatgtagtaattgaagataaattggtacattaattatcaacaattagtatgattaaaattagaaag 16046945  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 28968383 - 28968443
Alignment:
Q  12 tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 72  Q
    ||||||| |||||||||| ||| |||||||||||||||| |||| ||||  ||||||||||    
T  28968383 tatggatatagtaattgaaaataaaatggtacattaattttcaaaaattgatatgattaaa 28968443  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 2255866 - 2255797
Alignment:
Q  12 tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgatt-aaattagaaag 80  Q
    ||||||| |||||||||| ||| |||| ||||||||||| |||| ||||| ||||||| |||||||||||    
T  2255866 tatggatatagtaattgaaaataaaattgtacattaattttcaaaaatttatatgattaaaattagaaag 2255797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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