View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0840_low_15 (Length: 397)
Name: NF0840_low_15
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 33588023 - 33588391
Alignment:
| Q |
1 |
catatttggcttgatgtggaattgattataataattctatgattcaatcattgctctgactctggaagtggatatggttttatcgtttttctactaatat |
100 |
Q |
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| T |
33588023 |
catatttggcttgatgtggaattgattataat---tctatgattcaatcattactctgactctggaagtggatatggttttatcgtttttctactaatat |
33588119 |
T |
|
| Q |
101 |
tgttgtgacccaaaaaaggaatgggtagcgaagtgagttattatgcaaacaacggcattgtt-gtcatgtacatgatccgtcaagtgtgagtaaacatat |
199 |
Q |
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||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33588120 |
tgt---gacccaaaaaaagaatgggtagcgaagtgagttatcatgcaaacaacggcactgtttgtcatgtacatgatccgtcaagtgtgagtaaacatat |
33588216 |
T |
|
| Q |
200 |
ttttatttaacaaatttcaaagtatttatttgagttttataaaattgtgatgctatctccagagtcagagcaattattggatgagattcggtaaagttga |
299 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
33588217 |
ttttatttaaaaaatttcaaagtatttatttgagttttataaaattgtg------------------gagaaattattggatgagattcggtaaagttga |
33588298 |
T |
|
| Q |
300 |
actcgatgcgcagaacctgtgcagttgaaaaaacatacgcaattgatgctggtagttgcatagaaatttgatttgatttcatgtattgagagt |
392 |
Q |
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||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33588299 |
actcgatgcgcggtacctatgcagttgaaaaaacatacgcaattgatgctggtagttgcatagaaatttgatttgatttcatgtattgagagt |
33588391 |
T |
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