View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0840_low_18 (Length: 354)

Name: NF0840_low_18
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0840_low_18
NF0840_low_18
[»] chr3 (3 HSPs)
chr3 (1-346)||(23627818-23628163)
chr3 (1-346)||(23640428-23640777)
chr3 (10-181)||(23654354-23654525)


Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 23627818 - 23628163
Alignment:
Q  1 ttttgtgatattttcaaagccctgaggagcctggacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattga 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23627818 ttttgtgatattttcaaagccctgaggagcctgcacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattga 23627917  T
Q  101 gaattgtttgagtacatgtcacaatctacattcagaattatttttccattgctaatcattgatgacacccttatctgcattgtggaccaacaattaatac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23627918 gaattgtttgagtacatgtcacaatctacattcagaattattttcccattgctaatcattgatgacacccttatctgcattgtggaccaacaattaatac 23628017  T
Q  201 actgcatactttcttggggaacaattaatacattatatagagtaccaatgaattcatagctccagctttgaagttatgatgaaattggggtcttttctca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23628018 actgcatactttcttggggaacaattaatacattatatagagtaccaatgaattcatagctccagctttgaagttatgttgaaattggggtcttttctca 23628117  T
Q  301 cgagccaaatataccaaggtgggcataaccaacccatcttcatctc 346  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  23628118 cgagccaaatataccaatgtgggcataacaaacccatcttcatctc 23628163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 23640428 - 23640777
Alignment:
Q  1 ttttgtgatattttcaaagccctgaggagcctggacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattga 100  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23640428 ttttgtgatattttcaaagccctgaggagtctgcacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattga 23640527  T
Q  101 gaattgtttgagtacatgtcacaatctacattcagaattatttttccattgctaatcattgatgacacccttatctgcattgtggaccaacaattaatac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  23640528 gaattgtttgagtacatgtcacaatctacattcagaattatttttccattgctaatcattgatgacacccttatctgcattgaggaccaacaattaattc 23640627  T
Q  201 actgcatactttctt---ggggaacaattaat-acattatatagagtaccaatgaattcatagctccagctttgaagttatgatgaaattggggtctttt 296  Q
    | || ||||||||||   |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23640628 attgtatactttctttaaggggtacaattaataacattatatagagtaccaatgaattcatagctccagctttgaagttatgatgaaattggggtctttt 23640727  T
Q  297 ctcacgagccaaatataccaaggtgggcataaccaacccatcttcatctc 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23640728 ctcacgagccaaatataccaaggtgggcataaccaacccatcttcatctc 23640777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 23654354 - 23654525
Alignment:
Q  10 attttcaaagccctgaggagcctggacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattgagaattgttt 109  Q
    |||||||||| |||| |||| ||| ||||| ||||||||||| || |||||||||||||||||  | || || | ||||||||| ||||  |||||||||    
T  23654354 attttcaaaggcctgtggagactgcacaaaagcaatttcatggcctttctcttcatccatgaaataacagagagaatctcttatagattctgaattgttt 23654453  T
Q  110 gagtacatgtcacaatctacattcagaattatttttccattgctaatcattgatgacacccttatctgcatt 181  Q
    ||||||||||||||||||||||| ||||| | ||| || ||||| || || || |||||||||| |||||||    
T  23654454 gagtacatgtcacaatctacatttagaatgactttcccgttgctgataatcgaagacacccttaactgcatt 23654525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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