View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0840_low_23 (Length: 308)
Name: NF0840_low_23
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 126 - 302
Target Start/End: Original strand, 32619191 - 32619367
Alignment:
| Q |
126 |
tgcaattctgaaaatagtgtcatttgttttgaagacagtgaggcttccacgacatcaatgaccaagtcataacatagatgttatgttaattcattcattc |
225 |
Q |
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| T |
32619191 |
tgcaattctgaaaatagtgtcatttgttttgaagacagtgaggcttccacgacatcaatgaccaagtcataacatagatgttatgttaattcattcattc |
32619290 |
T |
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| Q |
226 |
agacattttttgctaattctagaagatttagtcacaatgacagacatgcatgttagttgcgaagtttaaggttattc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32619291 |
agacattttttgctaattctagaagatttagtcacaatgacagacatgcatgttagttacgaagtttaaggttattc |
32619367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 32619072 - 32619101
Alignment:
| Q |
7 |
agatgaaactgggaattacaatgtaagtgc |
36 |
Q |
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| T |
32619072 |
agatgaaactgggaattacaatgtaagtgc |
32619101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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