View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0840_low_24 (Length: 302)
Name: NF0840_low_24
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_low_24 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 292
Target Start/End: Original strand, 38816558 - 38816823
Alignment:
| Q |
30 |
aaataaggcctaagtagagccttagaagttggcttggtggagttgagactgctgtattatccatgaaccaagttcagtagtgttgggtgtgagaagatgt |
129 |
Q |
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| T |
38816558 |
aaataaggcctaagtagagccttagaagttggcttggtggagttgagactgctgtattatccatgaaccaagttcagtagtgttgggtgtgagaagatgt |
38816657 |
T |
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| Q |
130 |
attagaaaaaacttgtgtgtgagataaggcctaaatagaacttctaatatctaggcaatctcctccttacaagccac---nnnnnnnnnnnnnnaaaatt |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38816658 |
attagaaaaaacttgtgtgtgagataaggcctaaatagaacttctaatatctaggcaatctcctccttacaagccacttttttttcttttttttaaaatt |
38816757 |
T |
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| Q |
227 |
cagaatacatatatttgttacaaataagctgttgctgctgatgctcttgttatattctattctctg |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38816758 |
cagaatacatatatttgttacaaataagctgttgctgctgatgctcttgttatattctattctctg |
38816823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 39464538 - 39464596
Alignment:
| Q |
146 |
gtgtgagataaggcctaaatagaacttctaatatctaggcaatctcctccttacaagcc |
204 |
Q |
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| T |
39464538 |
gtgtgagataaggcctaaatagaacctctaatgtctaggcaatctgcactttacaagcc |
39464596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 39457312 - 39457370
Alignment:
| Q |
146 |
gtgtgagataaggcctaaatagaacttctaatatctaggcaatctcctccttacaagcc |
204 |
Q |
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| T |
39457312 |
gtgttagataaggcctaaacagaacttctactgtctaggcaatcttcaccttgcaagcc |
39457370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 23963 - 23905
Alignment:
| Q |
146 |
gtgtgagataaggcctaaatagaacttctaatatctaggcaatctcctccttacaagcc |
204 |
Q |
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| T |
23963 |
gtgtgagataaggcctaaatagaacctctaatgtctaggcaatctgcactttacaagcc |
23905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 39406455 - 39406398
Alignment:
| Q |
85 |
attatccatgaaccaagttcagtagtgttgggtgtgagaagatgtattagaaaaaact |
142 |
Q |
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| T |
39406455 |
attagccatgaaccaagtttggtagtgttgggcgtgagcaggtgtattacaaaaaact |
39406398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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