View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0840_low_29 (Length: 281)
Name: NF0840_low_29
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 18992136 - 18991873
Alignment:
| Q |
7 |
taatccaacacttttggacccaatttcattaactctctttacattgaacccccatacaaggatccaaccctacattaatgtgaaaattcaaccctatcct |
106 |
Q |
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| T |
18992136 |
taatccaacacttttggacccaacttcattaactctctttacattgaacccccatacaaggatccaaccctacatcaatgttaaaattcaaccctatcct |
18992037 |
T |
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| Q |
107 |
ctcaaaagtgataaaaatgcaatgtcctcagttagagaagttactctaacatcagcaccaccaaaatcatctcaatgtggtgtcacacataatatcccag |
206 |
Q |
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| T |
18992036 |
ctcaaaagtgataaaaatgcaatgtcttcagttagagaagttactctaacatcagcaccaccaaaatcatctcaatgtggtgtcacacataatatcccag |
18991937 |
T |
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| Q |
207 |
cattagtattcaatgcacgtggatacaatggaaacttctaccatgaaataaatgatatattcat |
270 |
Q |
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| T |
18991936 |
cattagtattcaatgcacgtggatacaatggaaacttctaccatgaaataaatgacatattcat |
18991873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 18997192 - 18996932
Alignment:
| Q |
10 |
tccaacacttttggacccaatttcattaactctctttacattgaacccccatacaaggatccaaccctacattaatgtgaaaattcaaccctatcc-tct |
108 |
Q |
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| T |
18997192 |
tccaacacttttagacccaacttcattaactctctttgcattaggtcctcatacaaggattcaacatcacatccatatgaaaat-caagcctttccctct |
18997094 |
T |
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| Q |
109 |
caaaagtgataaaaatgcaatgtcctcagttagagaagttactctaacatcagcaccaccaaaatcatctcaatgtggtgtcacacataatatcccagca |
208 |
Q |
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| T |
18997093 |
gaaaaatgatacaaatgcaatgtcccccattagtgaactcactctcacatcagcaccattaaaatcatctcaatgcggtgtcacacatcatagcccagca |
18996994 |
T |
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| Q |
209 |
ttagtattcaatgcacgtggatacaatggaaacttctaccatgaaataaatgatatattcat |
270 |
Q |
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| T |
18996993 |
ttagtattcagtgttggagggtatactggaaacttctaccatgacatgaatgaaattttcat |
18996932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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