View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0840_low_3 (Length: 623)

Name: NF0840_low_3
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0840_low_3
NF0840_low_3
[»] chr7 (28 HSPs)
chr7 (315-617)||(25791467-25791764)
chr7 (365-434)||(22602707-22602777)
chr7 (365-446)||(1433434-1433516)
chr7 (369-446)||(19206030-19206108)
chr7 (365-445)||(21828402-21828483)
chr7 (365-441)||(32308105-32308182)
chr7 (368-455)||(9482905-9482993)
chr7 (365-446)||(26329379-26329461)
chr7 (365-446)||(27945021-27945103)
chr7 (312-348)||(1433543-1433579)
chr7 (371-434)||(3520345-3520409)
chr7 (365-440)||(6630909-6630985)
chr7 (394-446)||(11722125-11722177)
chr7 (368-439)||(20549778-20549850)
chr7 (397-460)||(20545266-20545329)
chr7 (368-446)||(26733284-26733363)
chr7 (365-446)||(18215183-18215265)
chr7 (365-446)||(21138993-21139072)
chr7 (396-458)||(23191864-23191926)
chr7 (310-348)||(40131936-40131974)
chr7 (365-457)||(5548646-5548738)
chr7 (408-449)||(11072275-11072316)
chr7 (311-340)||(14729795-14729824)
chr7 (314-347)||(18035806-18035839)
chr7 (311-348)||(29763127-29763164)
chr7 (374-446)||(43249973-43250046)
chr7 (394-446)||(10042917-10042969)
chr7 (311-347)||(30813882-30813918)
[»] scaffold0598 (2 HSPs)
scaffold0598 (147-348)||(7816-8028)
scaffold0598 (30-87)||(7699-7756)
[»] chr6 (30 HSPs)
chr6 (368-448)||(20371110-20371191)
chr6 (368-457)||(7265593-7265683)
chr6 (365-446)||(9027158-9027240)
chr6 (368-439)||(7377966-7378038)
chr6 (368-446)||(5732510-5732589)
chr6 (368-434)||(9629375-9629442)
chr6 (370-446)||(9658859-9658936)
chr6 (368-446)||(426514-426593)
chr6 (368-434)||(19040344-19040411)
chr6 (373-446)||(30866149-30866223)
chr6 (367-423)||(9617437-9617494)
chr6 (394-446)||(17341691-17341743)
chr6 (365-444)||(26562671-26562751)
chr6 (394-449)||(17841616-17841671)
chr6 (365-431)||(32320666-32320733)
chr6 (368-434)||(33001289-33001356)
chr6 (365-418)||(9025491-9025545)
chr6 (365-446)||(10294087-10294169)
chr6 (369-446)||(13851716-13851794)
chr6 (365-434)||(16488587-16488657)
chr6 (365-446)||(16766677-16766759)
chr6 (365-434)||(18367828-18367898)
chr6 (395-457)||(19147431-19147493)
chr6 (365-446)||(34073344-34073426)
chr6 (365-445)||(677818-677899)
chr6 (307-348)||(10842617-10842658)
chr6 (370-418)||(32299283-32299332)
chr6 (311-347)||(7723197-7723233)
chr6 (394-450)||(10842508-10842564)
chr6 (365-412)||(13815456-13815504)
[»] chr8 (18 HSPs)
chr8 (371-458)||(31236580-31236668)
chr8 (368-457)||(34897054-34897144)
chr8 (368-440)||(4786338-4786411)
chr8 (365-433)||(11944658-11944727)
chr8 (365-431)||(11927083-11927150)
chr8 (404-447)||(31109555-31109598)
chr8 (365-446)||(22651956-22652038)
chr8 (365-446)||(24362199-24362281)
chr8 (373-446)||(27213527-27213601)
chr8 (368-440)||(13844596-13844669)
chr8 (311-348)||(22652071-22652108)
chr8 (366-440)||(39954277-39954352)
chr8 (313-347)||(11803355-11803389)
chr8 (365-453)||(15816126-15816215)
chr8 (311-348)||(24413497-24413534)
chr8 (312-349)||(31514937-31514974)
chr8 (313-345)||(27067231-27067263)
chr8 (394-457)||(30271318-30271382)
[»] chr1 (28 HSPs)
chr1 (365-457)||(6427314-6427412)
chr1 (369-445)||(2896122-2896199)
chr1 (369-448)||(6415002-6415082)
chr1 (370-440)||(13997869-13997940)
chr1 (369-450)||(36878437-36878519)
chr1 (368-446)||(9709800-9709879)
chr1 (394-440)||(21530675-21530721)
chr1 (369-457)||(1815226-1815315)
chr1 (314-446)||(5376448-5376579)
chr1 (311-348)||(48450548-48450585)
chr1 (394-446)||(398792-398844)
chr1 (313-457)||(1704935-1705082)
chr1 (368-439)||(29163381-29163453)
chr1 (375-446)||(32724105-32724177)
chr1 (308-413)||(44482243-44482346)
chr1 (370-428)||(1864882-1864941)
chr1 (313-348)||(9828139-9828174)
chr1 (313-348)||(22881567-22881602)
chr1 (368-446)||(52903229-52903308)
chr1 (365-446)||(1486706-1486788)
chr1 (314-348)||(8010225-8010259)
chr1 (365-434)||(9828036-9828106)
chr1 (373-446)||(10577740-10577814)
chr1 (365-446)||(20157347-20157429)
chr1 (369-446)||(38503300-38503378)
chr1 (368-457)||(39953146-39953236)
chr1 (394-447)||(9103619-9103672)
chr1 (394-446)||(1262864-1262916)
[»] chr3 (25 HSPs)
chr3 (310-446)||(4990909-4991046)
chr3 (394-457)||(5339077-5339140)
chr3 (368-446)||(8383237-8383316)
chr3 (368-446)||(25093482-25093561)
chr3 (405-450)||(21720740-21720785)
chr3 (365-457)||(25948884-25948977)
chr3 (368-457)||(13845525-13845613)
chr3 (394-457)||(23870586-23870649)
chr3 (365-434)||(8039832-8039902)
chr3 (368-450)||(10318035-10318117)
chr3 (365-434)||(16192747-16192817)
chr3 (368-457)||(18426918-18427008)
chr3 (394-456)||(29112307-29112369)
chr3 (314-348)||(34910401-34910435)
chr3 (315-348)||(4987222-4987255)
chr3 (368-428)||(7928448-7928509)
chr3 (374-446)||(24205047-24205120)
chr3 (368-440)||(35222924-35222997)
chr3 (311-348)||(55401159-55401196)
chr3 (394-442)||(2620080-2620128)
chr3 (368-439)||(8789550-8789622)
chr3 (313-353)||(8842408-8842448)
chr3 (394-446)||(10268513-10268565)
chr3 (396-440)||(26290357-26290401)
chr3 (394-434)||(32804567-32804607)
[»] chr2 (15 HSPs)
chr2 (371-446)||(23718006-23718082)
chr2 (371-446)||(24105678-24105754)
chr2 (376-446)||(21616742-21616813)
chr2 (368-449)||(37558954-37559036)
chr2 (394-446)||(30404877-30404929)
chr2 (369-448)||(42832277-42832357)
chr2 (368-446)||(20242727-20242806)
chr2 (394-457)||(27084231-27084294)
chr2 (309-348)||(42511318-42511357)
chr2 (365-450)||(30527592-30527678)
chr2 (365-446)||(34784979-34785061)
chr2 (365-426)||(44860320-44860382)
chr2 (408-457)||(34994017-34994066)
chr2 (370-434)||(39279667-39279732)
chr2 (410-446)||(16069297-16069333)
[»] scaffold0004 (1 HSPs)
scaffold0004 (394-457)||(92776-92839)
[»] chr5 (22 HSPs)
chr5 (365-450)||(3966478-3966565)
chr5 (363-445)||(16734847-16734932)
chr5 (368-434)||(28588674-28588741)
chr5 (365-457)||(39205849-39205942)
chr5 (365-457)||(39698510-39698603)
chr5 (394-446)||(7175046-7175098)
chr5 (367-450)||(11685916-11685999)
chr5 (394-446)||(19552570-19552622)
chr5 (314-348)||(3966598-3966632)
chr5 (365-446)||(6401478-6401560)
chr5 (367-456)||(10298539-10298629)
chr5 (391-441)||(17123033-17123083)
chr5 (365-434)||(21814253-21814323)
chr5 (311-340)||(17593661-17593690)
chr5 (394-447)||(27144442-27144495)
chr5 (369-457)||(42893329-42893418)
chr5 (365-440)||(2436908-2436984)
chr5 (365-440)||(6035469-6035544)
chr5 (394-446)||(9449449-9449501)
chr5 (394-446)||(14674249-14674301)
chr5 (312-348)||(21576684-21576720)
chr5 (365-440)||(31084309-31084385)
[»] scaffold0036 (1 HSPs)
scaffold0036 (365-457)||(9744-9835)
[»] chr4 (17 HSPs)
chr4 (365-457)||(22234887-22234981)
chr4 (366-446)||(13783261-13783342)
chr4 (367-440)||(35723383-35723458)
chr4 (365-446)||(5414169-5414251)
chr4 (365-446)||(40742571-40742653)
chr4 (365-450)||(46160873-46160958)
chr4 (394-447)||(7012045-7012098)
chr4 (365-446)||(30982875-30982954)
chr4 (309-348)||(824212-824251)
chr4 (369-427)||(5775359-5775418)
chr4 (313-348)||(30299013-30299048)
chr4 (313-348)||(30327881-30327916)
chr4 (313-418)||(11596297-11596403)
chr4 (373-434)||(40613442-40613504)
chr4 (313-346)||(12884347-12884380)
chr4 (365-457)||(46083988-46084080)
chr4 (394-446)||(20521876-20521928)
[»] scaffold0110 (1 HSPs)
scaffold0110 (365-433)||(28843-28912)
[»] scaffold0697 (1 HSPs)
scaffold0697 (394-440)||(1630-1676)
[»] scaffold0018 (1 HSPs)
scaffold0018 (394-443)||(192276-192325)
[»] scaffold0007 (1 HSPs)
scaffold0007 (374-446)||(225274-225347)
[»] scaffold0103 (1 HSPs)
scaffold0103 (394-449)||(51788-51843)
[»] scaffold0168 (1 HSPs)
scaffold0168 (365-446)||(21023-21105)
[»] scaffold0020 (1 HSPs)
scaffold0020 (365-446)||(135309-135391)
[»] scaffold0154 (1 HSPs)
scaffold0154 (312-341)||(13515-13544)
[»] scaffold0085 (1 HSPs)
scaffold0085 (374-434)||(26385-26446)
[»] scaffold0306 (1 HSPs)
scaffold0306 (394-446)||(13380-13432)
[»] scaffold0152 (1 HSPs)
scaffold0152 (394-446)||(21895-21947)
[»] scaffold0027 (2 HSPs)
scaffold0027 (394-446)||(46662-46714)
scaffold0027 (313-349)||(46740-46776)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 315 - 617
Target Start/End: Complemental strand, 25791764 - 25791467
Alignment:
Q  315 atgaagtacggacactcctcggattagacgtgtcgcaatgtctgatatttacacgacaccgacacatataactacattgattatgtgaatttctcaaata 414  Q
    |||||||||||| |||||| ||||||||||| ||||| ||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25791764 atgaagtacggatactccttggattagacgtttcgcagtgtttgacatctacacgacaccgacacatataactacattgattatgtgaatttctcaaata 25791665  T
Q  415 attaacggtgtcggcgtgtc------tgtgtccgtgtccgtgcttcatattatggataggattatggaaatgcaatgaatttcttccagttcatgcttta 508  Q
    |||| |||||||||||||||      ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||           |||    
T  25791664 attagcggtgtcggcgtgtcagtgtctgtgtccgtatccgtgcttcatattatggataggattatggaaatgcaatgaatttcttc-----------tta 25791576  T
Q  509 tgttttgaaaattgtggaaatggaaacaaaatcaaaacctcaaatatagattactatcagatattgggttttacatgagattcaaaattgaactttgatc 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25791575 tgttttgaaaattgtggaaatggaaacaaaatcaaaacctcaaatatagattactatcagatattgggttttacatgagattcaaaattgaactttgatc 25791476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 22602707 - 22602777
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    ||||||||||||||||||||| |||| ||| |||||||| |||||||||||||| ||||||||||||||||    
T  22602707 acacgacaccgacacatataattacactgaattatgtgattttctcaaataatttacggtgtcggcgtgtc 22602777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 365 - 446
Target Start/End: Complemental strand, 1433516 - 1433434
Alignment:
Q  365 acacgacaccgacacatataactacattgatt-atgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||||||||| ||||   | | |||||| |||||||||| ||||||||||||||||||||  ||||||||||    
T  1433516 acacgacaccgacacatataattacaccaaatgatgtgattttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtc 1433434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 369 - 446
Target Start/End: Complemental strand, 19206108 - 19206030
Alignment:
Q  369 gacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||||| || | ||| |||||||| |||||||||| |||| ||||||||||||||  |||||||||||    
T  19206108 gacaccgacacatataattataatgaattatgtgattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtc 19206030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 365 - 445
Target Start/End: Original strand, 21828402 - 21828483
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgt 445  Q
    |||| |||| |||||||| || |||| || ||||||||| |||||||||| | |||||||||||||||||| ||||||||||    
T  21828402 acacaacactgacacatacaattacaatggattatgtgattttctcaaattactaacggtgtcggcgtgtcagtgtccgtgt 21828483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 365 - 441
Target Start/End: Complemental strand, 32308182 - 32308105
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtcc 441  Q
    ||||||||| |||||||| || |||| ||| |||||||| |||||||||| |||| ||||||||||||||| ||||||    
T  32308182 acacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtcc 32308105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 455
Target Start/End: Complemental strand, 9482993 - 9482905
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttca 455  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||| || | || |||||| ||||| |||||||| |||||||||||    
T  9482993 cgacaccgacacatataattacactgaattgtgtgattttctcaaattatcagcgatgtcggtgtgtcagtgtccgtatccgtgcttca 9482905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 26329379 - 26329461
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||| ||||||||||||| |||| ||| || ||||  |||||||||| ||||||| |||||||||||| ||||| |||||    
T  26329379 acacgacgccgacacatataattacactgaattgtgtgtttttctcaaattattaacgatgtcggcgtgtcagtgtctgtgtc 26329461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 446
Target Start/End: Complemental strand, 27945103 - 27945021
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||| | ||| |||| ||| |||||| | |||||||||| ||||  |||||||||||||| |||||||||||    
T  27945103 acacgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtc 27945021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 1433579 - 1433543
Alignment:
Q  312 gctatgaagtacggacactcctcggattagacgtgtc 348  Q
    ||||||||| |||||||||||||||||||||||||||    
T  1433579 gctatgaagcacggacactcctcggattagacgtgtc 1433543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 3520345 - 3520409
Alignment:
Q  371 caccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    ||||||||||||||| ||||||| ||||| ||| |||||||||| |||| ||||||| |||||||    
T  3520345 caccgacacatataattacattgaattatatgattttctcaaatgattatcggtgtcagcgtgtc 3520409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 440
Target Start/End: Original strand, 6630909 - 6630985
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtc 440  Q
    |||||||| |||||||||||| |||| ||| ||| |||| |||||||||| ||||  |||||||||||||| |||||    
T  6630909 acacgacatcgacacatataattacactgaattaagtgactttctcaaattattagtggtgtcggcgtgtcagtgtc 6630985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 11722125 - 11722177
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| ||||||||||  ||| ||||||||||||||| |||||||||||    
T  11722125 attatgtgattttctcaaattgttagcggtgtcggcgtgtcagtgtccgtgtc 11722177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 368 - 439
Target Start/End: Complemental strand, 20549850 - 20549778
Alignment:
Q  368 cgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgt 439  Q
    |||||||||||||||||| |||| || |||| |||| |||||||||| |||| ||||||||| ||||| ||||    
T  20549850 cgacaccgacacatataattacactgaattacgtgattttctcaaattattagcggtgtcggtgtgtcagtgt 20549778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 460
Target Start/End: Original strand, 20545266 - 20545329
Alignment:
Q  397 atgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcatatta 460  Q
    |||||| ||| |||||| |||| |||||| |||||||| || ||||| ||||||||||||||||    
T  20545266 atgtgattttttcaaattattagcggtgttggcgtgtccgtatccgtatccgtgcttcatatta 20545329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 446
Target Start/End: Complemental strand, 26733363 - 26733284
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||||||||||| ||| || | ||| |||||||| ||| |||||| |||| |||||||| |||||| |||||||||||    
T  26733363 cgacaccgacacatttaattagactgaattatgtgattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtc 26733284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 18215183 - 18215265
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||| | |||||||| || ||||||||| ||| |||||| |||| | | ||||||||||  |||||||||||    
T  18215183 acacgacaccgacacttgtaactacactgcattatgtgattttttcaaattattagctgcgtcggcgtgttagtgtccgtgtc 18215265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 21138993 - 21139072
Alignment:
Q  365 acacgacaccgacacatataactacattgattatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||||||||| |||| | ||||  ||| |||||||||| ||||||||||| | | |||| ||||| |||||    
T  21138993 acacgacaccgacacatataattacagtaatta--tgattttctcaaattattaacggtgttgacatgtcagtgtctgtgtc 21139072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 458
Target Start/End: Complemental strand, 23191926 - 23191864
Alignment:
Q  396 tatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcatat 458  Q
    ||||||| |||||||||| |||| |||||||||||| || |||||||| |  |||||||||||    
T  23191926 tatgtgattttctcaaattattagcggtgtcggcgtatcagtgtccgtatatgtgcttcatat 23191864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 40131936 - 40131974
Alignment:
Q  310 aagctatgaagtacggacactcctcggattagacgtgtc 348  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  40131936 aagctatgaagcacagacactcctcggattagacgtgtc 40131974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 457
Target Start/End: Complemental strand, 5548738 - 5548646
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    ||||||||| ||||||||||| |||| ||| |||| ||| |||||||||| || | |||||||||| | |  |||||||| |||||||||||||    
T  5548738 acacgacactgacacatataattacactgaattatttgattttctcaaattatcagcggtgtcggcattta-gtgtccgtatccgtgcttcata 5548646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 11072316 - 11072275
Alignment:
Q  408 tcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgt 449  Q
    |||||| |||| |||||||||||||||||||| |||||||||    
T  11072316 tcaaattattatcggtgtcggcgtgtctgtgttcgtgtccgt 11072275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 340
Target Start/End: Complemental strand, 14729824 - 14729795
Alignment:
Q  311 agctatgaagtacggacactcctcggatta 340  Q
    ||||||||||||||||||||||||||||||    
T  14729824 agctatgaagtacggacactcctcggatta 14729795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 18035806 - 18035839
Alignment:
Q  314 tatgaagtacggacactcctcggattagacgtgt 347  Q
    ||||||| ||||||||||||||||||||||||||    
T  18035806 tatgaagcacggacactcctcggattagacgtgt 18035839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 29763127 - 29763164
Alignment:
Q  311 agctatgaagtacggacactcctcggattagacgtgtc 348  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  29763127 agctatgaagcacggacactcctcggattaggcgtgtc 29763164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 43250046 - 43249973
Alignment:
Q  374 cgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||| ||||| |||| || ||||||| | |||||||||| |||| | ||||||||||||| |||||||||||    
T  43250046 cgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtc 43249973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 10042969 - 10042917
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||| |||||| ||||  |||||||||||||  |||||||||||    
T  10042969 attatgtgaatttatcaaattattagtggtgtcggcgtgtaagtgtccgtgtc 10042917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 30813918 - 30813882
Alignment:
Q  311 agctatgaagtacggacactcctcggattagacgtgt 347  Q
    |||||||||| |||||||||||||||||||| |||||    
T  30813918 agctatgaagcacggacactcctcggattaggcgtgt 30813882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 147 - 348
Target Start/End: Original strand, 7816 - 8028
Alignment:
Q  147 gggtatctttgcgcgttgtccggagtattttccggtggtttttcattgcttgtagacaatgtcatgccatggaaccgtccaagacaaacaataaagggat 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7816 gggtatctttgcgcgttgtccggagtattttccggtggtttttcattgcttgtagacaatgtcatgccatggaaccgtccaagacaaacaataaagggat 7915  T
Q  247 aaaaattaaaaagagtaattaattgaatgct-----------tgctttattcttgaactttgctggtgtcaccaaagctatgaagtacggacactcctcg 335  Q
    |||||||||||||||||||||||||||||||           |||||||| ||||||||||||||||||| || ||||||||||||||| ||||| |||     
T  7916 aaaaattaaaaagagtaattaattgaatgcttgttttaccggtgctttatccttgaactttgctggtgtctccgaagctatgaagtacgcacacttctcc 8015  T
Q  336 gattagacgtgtc 348  Q
    ||||||| |||||    
T  8016 gattagatgtgtc 8028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 7699 - 7756
Alignment:
Q  30 gttctcaaaggtggcagtatataactccggtgccagccgcattgaaccgtgacacttc 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7699 gttctcaaaggtggcagtatataactccggtgccagccgcattgaaccgtgacacttc 7756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 368 - 448
Target Start/End: Original strand, 20371110 - 20371191
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccg 448  Q
    ||||||||||||||||||  ||||||| |||||||| |||||||||| |||| |||||||||||||||  ||||||||||||    
T  20371110 cgacaccgacacatataatcacattgagttatgtgattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtccg 20371191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 368 - 457
Target Start/End: Original strand, 7265593 - 7265683
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    |||||||||||||||||| |||| ||| |||||||| |||||||||| |||| |||||| |||||||| |||||||  | |||||||||||    
T  7265593 cgacaccgacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtccgaatacgtgcttcata 7265683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 365 - 446
Target Start/End: Complemental strand, 9027240 - 9027158
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||||||||| ||||  || |||||||| | |||||||| |||| ||||||||||||||| |||||||||||    
T  9027240 acacgacaccgacacatataattacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtc 9027158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 368 - 439
Target Start/End: Complemental strand, 7378038 - 7377966
Alignment:
Q  368 cgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgt 439  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||||  ||| ||||||||| ||||||||||    
T  7378038 cgacaccgacacatataattacattgaattatgtgattttctcaaatttttagcggtgtcggggtgtctgtgt 7377966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 5732510 - 5732589
Alignment:
Q  368 cgacaccgacacatataactacattgat-tatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||||||||||||||| |||| | |  ||||||| |||||||||| |||||||||||||||||||| |||||| ||||    
T  5732510 cgacaccgacacatataattacactaaaatatgtgattttctcaaattattaacggtgtcggcgtgtcagtgtccatgtc 5732589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 434
Target Start/End: Complemental strand, 9629442 - 9629375
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    |||||||||||||||||| |||||||| |||||||| |||||||||| |||  |||||||||||||||    
T  9629442 cgacaccgacacatataattacattgaattatgtgattttctcaaattattggcggtgtcggcgtgtc 9629375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 370 - 446
Target Start/End: Complemental strand, 9658936 - 9658859
Alignment:
Q  370 acaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| |||||| |||| ||| |||||||| ||||| |||| |||| ||||||||||||||| |||||||||||    
T  9658936 acaccgacaaatataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtc 9658859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 426514 - 426593
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||||||||| | ||| |||||| | |||||||| ||| |||||| |||||| ||||||||||||| |||||||||||    
T  426514 cgacaccgacacttgtaattacatttaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtc 426593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 434
Target Start/End: Complemental strand, 19040411 - 19040344
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    |||||| ||||||||||| |||| ||| |||||||| |||||||||| |||| |||||||||||||||    
T  19040411 cgacacagacacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 19040344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 446
Target Start/End: Original strand, 30866149 - 30866223
Alignment:
Q  373 ccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||| ||||||| ||||||||| |||||||||| |||| |||||| || ||||| ||||| |||||    
T  30866149 ccgacacatataattacattgaattatgtgattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtc 30866223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 367 - 423
Target Start/End: Complemental strand, 9617494 - 9617437
Alignment:
Q  367 acgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggt 423  Q
    ||||||||||||||||||| ||||||| ||||||||| |||||||||| |||| ||||    
T  9617494 acgacaccgacacatataattacattgaattatgtgattttctcaaattattaccggt 9617437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 17341691 - 17341743
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| ||| |||||| |||||||||||||||||||| ||| |||||||    
T  17341691 attatgtgattttatcaaattattaacggtgtcggcgtgtcagtgcccgtgtc 17341743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 444
Target Start/End: Complemental strand, 26562751 - 26562671
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtg 444  Q
    |||||||| |||||||||||| |||| ||| |||||||| ||||||||||  ||| | ||||||||||||| |||| ||||    
T  26562751 acacgacatcgacacatataattacactgaattatgtgattttctcaaatttttagcagtgtcggcgtgtccgtgttcgtg 26562671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 449
Target Start/End: Original strand, 17841616 - 17841671
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgt 449  Q
    ||||||||| ||| |||||| |||| | ||||||||||||| ||||||||||||||    
T  17841616 attatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgt 17841671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 431
Target Start/End: Original strand, 32320666 - 32320733
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgt 431  Q
    |||||||||||| ||||||||  ||||||| |||||||| ||| |||||| |||||||||||| ||||    
T  32320666 acacgacaccgatacatataatgacattgaattatgtgattttatcaaattattaacggtgtcagcgt 32320733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 434
Target Start/End: Original strand, 33001289 - 33001356
Alignment:
Q  368 cgacaccgacacatataactaca-ttgattatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    |||||||||||||||||| |||| || ||||||||| ||| |||||| |||| | |||||||||||||    
T  33001289 cgacaccgacacatataattacatttaattatgtgattttttcaaattattagcagtgtcggcgtgtc 33001356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 9025491 - 9025545
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataatta 418  Q
    ||||||||||||||||||||| |||| || ||||||||| |||||||||| ||||    
T  9025491 acacgacaccgacacatataattacactgaattatgtgattttctcaaattatta 9025545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 446
Target Start/End: Complemental strand, 10294169 - 10294087
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||||||||| ||||||| | |||| || | |||||||| |||| |||| ||||| |||| || ||||||||    
T  10294169 acacgacaccgacacatataattacattgaaatatgcgattatctcaaattattagcggtatcggcatgtcagtatccgtgtc 10294087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 369 - 446
Target Start/End: Complemental strand, 13851794 - 13851716
Alignment:
Q  369 gacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||| |||||||||||| |||| ||| ||| || | |||||||||| |||| |||||||| |||||| |||||||||||    
T  13851794 gacatcgacacatataattacactgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtc 13851716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 16488587 - 16488657
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    ||||||||||||||||||||| |||| || ||| ||||| ||||| ||| ||||| | |||||||||||||    
T  16488587 acacgacaccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtc 16488657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 446
Target Start/End: Complemental strand, 16766759 - 16766677
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||| | ||| |||| ||| |||||||| ||| |||||| |||| | ||||||||||||| |||||| ||||    
T  16766759 acacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtc 16766677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 434
Target Start/End: Complemental strand, 18367898 - 18367828
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    ||||||||||||||||||||| |||| || ||| ||||| ||||| ||| ||||| | |||||||||||||    
T  18367898 acacgacaccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtc 18367828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 457
Target Start/End: Original strand, 19147431 - 19147493
Alignment:
Q  395 ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    |||||||| |||||||||| |||| | ||||| | ||||| |||||||| |||||||||||||    
T  19147431 ttatgtgattttctcaaattattagctgtgtccgtgtgtcagtgtccgtatccgtgcttcata 19147493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 34073344 - 34073426
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||| ||||||| |||| ||| ||||| || |||||||||| |||| || ||| ||| |||| |||||||||||    
T  34073344 acacgacaccgacccatataattacactgaattatgagattttctcaaattattagcgatgttggcatgtcagtgtccgtgtc 34073426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 445
Target Start/End: Complemental strand, 677899 - 677818
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgt 445  Q
    |||||||||| || ||||||| |||| |  ||||| ||| |||||||||| |||||| ||||||||||||| ||||| ||||    
T  677899 acacgacaccaacgcatataaatacactatattatatgattttctcaaattattaacagtgtcggcgtgtcagtgtctgtgt 677818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 10842658 - 10842617
Alignment:
Q  307 ccaaagctatgaagtacggacactcctcggattagacgtgtc 348  Q
    ||||| |||||||| |||||||||||||||||||| ||||||    
T  10842658 ccaaatctatgaagcacggacactcctcggattagccgtgtc 10842617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 32299332 - 32299283
Alignment:
Q  370 acaccgacacatataactacattg-attatgtgaatttctcaaataatta 418  Q
    |||||||||| ||||||||||||| ||||||||| |||||||||| ||||    
T  32299332 acaccgacacgtataactacattgaattatgtgattttctcaaattatta 32299283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 7723197 - 7723233
Alignment:
Q  311 agctatgaagtacggacactcctcggattagacgtgt 347  Q
    |||||||||| |||||||||||||||||||| |||||    
T  7723197 agctatgaagcacggacactcctcggattaggcgtgt 7723233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 10842564 - 10842508
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtg 450  Q
    ||||||||| ||| |||||| |||| ||||||||||||||| |||||  ||||||||    
T  10842564 attatgtgattttttcaaattattagcggtgtcggcgtgtccgtgtcaatgtccgtg 10842508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 412
Target Start/End: Complemental strand, 13815504 - 13815456
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaa 412  Q
    |||||||||||| |||||||||| ||||| ||||||||| |||||||||    
T  13815504 acacgacaccgagacatataacttcattgaattatgtgattttctcaaa 13815456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 458
Target Start/End: Original strand, 31236580 - 31236668
Alignment:
Q  371 caccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcatat 458  Q
    ||||||||||||||| |||||||| |||||||| |||||||||| |||| | ||||||||||||| || ||| ||||| ||||||||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattattagcagtgtcggcgtgtccgtatccttgtccatgcttcatat 31236668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 368 - 457
Target Start/End: Complemental strand, 34897144 - 34897054
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    ||||| |||||||||||| |||| ||| |||||||| |||||||||| |||| |||||||| ||||||||||||||| |  ||||||||||    
T  34897144 cgacatcgacacatataattacactgaattatgtgattttctcaaattattagcggtgtcgacgtgtctgtgtccgtttatgtgcttcata 34897054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 368 - 440
Target Start/End: Original strand, 4786338 - 4786411
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtc 440  Q
    |||||||||||||||||| |||| ||| |||||||| ||||| |||| ||||| |||||||||||||| |||||    
T  4786338 cgacaccgacacatataattacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgtc 4786411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 365 - 433
Target Start/End: Complemental strand, 11944727 - 11944658
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgt 433  Q
    ||||||||||||||||||||| |||| ||| |||||||| ||| |||||| |||||| ||||||||||||    
T  11944727 acacgacaccgacacatataattacactgagttatgtgattttatcaaattattaacagtgtcggcgtgt 11944658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 365 - 431
Target Start/End: Original strand, 11927083 - 11927150
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgt 431  Q
    ||||||||||||||||||||| |||| || ||||||||| ||| |||||| |||||| ||||||||||    
T  11927083 acacgacaccgacacatataattacactgaattatgtgattttatcaaattattaacagtgtcggcgt 11927150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 404 - 447
Target Start/End: Original strand, 31109555 - 31109598
Alignment:
Q  404 tttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtcc 447  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  31109555 tttctcaaattattaacggtgtcggcgtgtcagtgtccgtgtcc 31109598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 446
Target Start/End: Complemental strand, 22652038 - 22651956
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||| | ||| || ||||| |||||||| ||| |||||| |||| | ||||||||||||| |||||||||||    
T  22652038 acacgacaccgacacttgtaattatattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 22651956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 24362199 - 24362281
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||  ||||||||||| |||| ||| |||||||| | |||||||| |||| ||||||||||||||| ||||| |||||    
T  24362199 acacgacattgacacatataattacactgaattatgtgattctctcaaattattagcggtgtcggcgtgtcggtgtctgtgtc 24362281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 446
Target Start/End: Complemental strand, 27213601 - 27213527
Alignment:
Q  373 ccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||| |||| ||| |||||||| ||||| |||| |||| | |||||||||||||||| ||||||||    
T  27213601 ccgacacatataattacagtgaattatgtgattttctgaaattattagcagtgtcggcgtgtctgtatccgtgtc 27213527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 368 - 440
Target Start/End: Original strand, 13844596 - 13844669
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtc 440  Q
    |||||||||||||||||| |||| | | |||||||| |||||||||| |||| | ||||||||||||| |||||    
T  13844596 cgacaccgacacatataattacactcaattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgtc 13844669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 22652108 - 22652071
Alignment:
Q  311 agctatgaagtacggacactcctcggattagacgtgtc 348  Q
    |||||||||| |||||||||||||||||||||||||||    
T  22652108 agctatgaagcacggacactcctcggattagacgtgtc 22652071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 440
Target Start/End: Original strand, 39954277 - 39954352
Alignment:
Q  366 cacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtc 440  Q
    |||| ||||| ||||||||| |||| | | |||||||| |||||||||| |||| ||||||||||||||| |||||    
T  39954277 cacggcaccgtcacatataattacactaaattatgtgattttctcaaattattagcggtgtcggcgtgtcggtgtc 39954352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 11803389 - 11803355
Alignment:
Q  313 ctatgaagtacggacactcctcggattagacgtgt 347  Q
    |||||||| ||||||||||||||||||||||||||    
T  11803389 ctatgaagcacggacactcctcggattagacgtgt 11803355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 453
Target Start/End: Original strand, 15816126 - 15816215
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgctt 453  Q
    ||||||||||||||| ||||| |||| | | |||||||| ||| |||||| ||||   ||||||||||||| |||||||| ||| |||||    
T  15816126 acacgacaccgacacttataattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtatccatgctt 15816215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 24413497 - 24413534
Alignment:
Q  311 agctatgaagtacggacactcctcggattagacgtgtc 348  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  24413497 agctatgaagcacggacacttctcggattagacgtgtc 24413534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 31514974 - 31514937
Alignment:
Q  312 gctatgaagtacggacactcctcggattagacgtgtcg 349  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  31514974 gctatgaagcacggacactcctcggattaggcgtgtcg 31514937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 27067231 - 27067263
Alignment:
Q  313 ctatgaagtacggacactcctcggattagacgt 345  Q
    |||||||| ||||||||||||||||||||||||    
T  27067231 ctatgaagcacggacactcctcggattagacgt 27067263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 457
Target Start/End: Original strand, 30271318 - 30271382
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtcc-gtgtccgtgcttcata 457  Q
    ||||||||| ||| |||||| |||| | ||||||||||||| |||||| ||||| ||||||||||    
T  30271318 attatgtgattttttcaaatgattagctgtgtcggcgtgtcagtgtccggtgtctgtgcttcata 30271382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 365 - 457
Target Start/End: Complemental strand, 6427412 - 6427314
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtg-----tccgtgcttcata 457  Q
    |||||||||| |||||||||| |||||||| |||||||| |||||||||| |||| |||||| |||||||| |||||||||     |||||||||||||    
T  6427412 acacgacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtccgtgccgtgtccgtgcttcata 6427314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 369 - 445
Target Start/End: Original strand, 2896122 - 2896199
Alignment:
Q  369 gacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgt 445  Q
    |||||||||| ||||| ||||| ||| |||||||| |||||||||| |||| ||||||||||||||| ||||||||||    
T  2896122 gacaccgacatatatagctacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgt 2896199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 6415002 - 6415082
Alignment:
Q  369 gacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccg 448  Q
    ||||||||||||| ||| || | || ||||||||| ||||||||||||||| || |||||||||||| |||||||||||||    
T  6415002 gacaccgacacatctaattaaactgtattatgtgattttctcaaataattagcgatgtcggcgtgtcagtgtccgtgtccg 6415082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 440
Target Start/End: Complemental strand, 13997940 - 13997869
Alignment:
Q  370 acaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtc 440  Q
    |||||||||||||||| |||| ||| |||||||| ||| | ||||||||||||||||||||||||| |||||    
T  13997940 acaccgacacatataattacactgaattatgtgatttttttaaataattaacggtgtcggcgtgtcagtgtc 13997869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 369 - 450
Target Start/End: Complemental strand, 36878519 - 36878437
Alignment:
Q  369 gacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtg 450  Q
    ||||||||||| ||||| |||| ||| |||||||| |||||||||| |||| ||||||||||||||| |||||  ||||||||    
T  36878519 gacaccgacacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtctatgtccgtg 36878437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 446
Target Start/End: Complemental strand, 9709879 - 9709800
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||||||||||||||| ||||  || |||||||| |||||||||| |||| |||||| ||| |||| |||||||||||    
T  9709879 cgacaccgacacatataattacaacgaattatgtgattttctcaaattattagcggtgtaggcatgtcagtgtccgtgtc 9709800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 21530721 - 21530675
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtc 440  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  21530721 attatatgattttctcaaattattaacggtgtcggcgtgtctgtgtc 21530675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 369 - 457
Target Start/End: Complemental strand, 1815315 - 1815226
Alignment:
Q  369 gacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    ||||||||||| | ||| |||| ||| |||||||| ||| | |||||||||   ||||||||||||| |||||||| |||||||||||||    
T  1815315 gacaccgacacttgtaattacactgaattatgtgattttttaaaataattatttgtgtcggcgtgtcagtgtccgtatccgtgcttcata 1815226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 314 - 446
Target Start/End: Original strand, 5376448 - 5376579
Alignment:
Q  314 tatgaagtacggacactcctcggattagacgtgtcgcaatgtctgatatttacacgacaccgacacatataactacattga-ttatgtgaatttctcaaa 412  Q
    ||||||| || |||||||||||||||||| |||| ||  |||| || ||  ||||||||||||||| | ||| |||| ||| |||||| | ||||| |||    
T  5376448 tatgaagcacagacactcctcggattagatgtgt-gcg-tgtccgacatcgacacgacaccgacacttttaattacactgaattatgttattttcttaaa 5376545  T
Q  413 taattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    | |||| ||||||||||||||  |||||||||||    
T  5376546 ttattagcggtgtcggcgtgttagtgtccgtgtc 5376579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 48450548 - 48450585
Alignment:
Q  311 agctatgaagtacggacactcctcggattagacgtgtc 348  Q
    |||||||||| |||||||||||||||||||||||||||    
T  48450548 agctatgaagcacggacactcctcggattagacgtgtc 48450585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 398792 - 398844
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| ||| |||||| |||| ||||||||||||||| |||||||||||    
T  398792 attatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtc 398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 457
Target Start/End: Original strand, 1704935 - 1705082
Alignment:
Q  313 ctatgaagtacggacactcctcggattagacgtgtcgcaatgtctgata--tttacacgacaccgacacatataactacattga-ttatgtgaatttctc 409  Q
    |||||||| | |||||||||| ||||||| |||||| |  |||| || |  || ||||||||||||||| | ||| |||  ||| |||||||| ||| ||    
T  1704935 ctatgaagcatggacactccttggattaggcgtgtctcggtgtcggacacgttgacacgacaccgacacttgtaattaccctgaattatgtgattttttc 1705034  T
Q  410 aaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    |||| ||||   ||||||| ||||| |||||||| |||||||||||||    
T  1705035 aaattattagatgtgtcggtgtgtcggtgtccgtatccgtgcttcata 1705082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 368 - 439
Target Start/End: Original strand, 29163381 - 29163453
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgt 439  Q
    |||||||||||||||||| || ||||| |||||||| ||||  ||||  ||| ||||||||||||||||||||    
T  29163381 cgacaccgacacatataattaaattgaattatgtgattttcctaaatttttagcggtgtcggcgtgtctgtgt 29163453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 375 - 446
Target Start/End: Original strand, 32724105 - 32724177
Alignment:
Q  375 gacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||| |||||| | |||||| |||||||||||| ||||||| ||||||||| || |||| ||||||    
T  32724105 gacacatataattacattaaattatgtaaatttctcaaattattaacgatgtcggcgtatcagtgttcgtgtc 32724177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 413
Target Start/End: Complemental strand, 44482346 - 44482243
Alignment:
Q  308 caaagctatgaagtacggacactcctcggattagacgtgtcgcaatgtctgatatttacacgacaccgacacatataactacattg-attatgtgaattt 406  Q
    |||| ||||| || ||||||||||||||||||||  ||||||   |||| || |   ||||||||||||||||||||| |||| || ||||||||| |||    
T  44482346 caaaactatggagcacggacactcctcggattagctgtgtcg---tgtccgacaccgacacgacaccgacacatataattacactgaattatgtgatttt 44482250  T
Q  407 ctcaaat 413  Q
    |||||||    
T  44482249 ctcaaat 44482243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 1864882 - 1864941
Alignment:
Q  370 acaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcgg 428  Q
    |||||||||||||||| |||| || ||||||||| |||||||||| |||||| |||||||    
T  1864882 acaccgacacatataattacactgaattatgtgattttctcaaattattaactgtgtcgg 1864941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 348
Target Start/End: Complemental strand, 9828174 - 9828139
Alignment:
Q  313 ctatgaagtacggacactcctcggattagacgtgtc 348  Q
    |||||||| |||||||||||||||||||||||||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtc 9828139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 348
Target Start/End: Original strand, 22881567 - 22881602
Alignment:
Q  313 ctatgaagtacggacactcctcggattagacgtgtc 348  Q
    |||||||| |||||||||||||||||||||||||||    
T  22881567 ctatgaagcacggacactcctcggattagacgtgtc 22881602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 446
Target Start/End: Complemental strand, 52903308 - 52903229
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||||||||||||||| |||| ||| |||| ||| ||| | |||| ||||||||| |||||||||  |||||||||||    
T  52903308 cgacaccgacacatataattacactgaattatatgattttattaaattattaacggtatcggcgtgttagtgtccgtgtc 52903229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 1486706 - 1486788
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||| ||||| |||| || ||||||||| ||| |||||| |||| | ||||| ||||||| || ||||||||    
T  1486706 acacgacaccgacacttataattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtc 1486788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 348
Target Start/End: Original strand, 8010225 - 8010259
Alignment:
Q  314 tatgaagtacggacactcctcggattagacgtgtc 348  Q
    ||||||||||||| |||||||||||||||||||||    
T  8010225 tatgaagtacggatactcctcggattagacgtgtc 8010259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 434
Target Start/End: Complemental strand, 9828106 - 9828036
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    |||||||||||||||||| || |||| ||| |||||||| ||| |||||| ||||  ||||||||||||||    
T  9828106 acacgacaccgacacataaaattacactgaattatgtgattttatcaaattattagtggtgtcggcgtgtc 9828036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 446
Target Start/End: Original strand, 10577740 - 10577814
Alignment:
Q  373 ccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||| |||| || ||| ||||| ||||| ||| ||||| | ||||||||||||| |||||||||||    
T  10577740 ccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtcggtgtccgtgtc 10577814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 20157347 - 20157429
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||||||| | |||| || ||||||||| ||||||| || |||| ||||||||  ||||| ||| |||||||    
T  20157347 acacgacaccgacacatatgattacactgaattatgtgattttctcacattattagcggtgtcgatgtgtcagtgcccgtgtc 20157429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 369 - 446
Target Start/End: Complemental strand, 38503378 - 38503300
Alignment:
Q  369 gacaccgacacatataactacattgat-tatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||||| |||| |||  ||| ||| |||||||||| |||| ||||||||| ||||  |||||||||||    
T  38503378 gacaccgacacatataattacactgaaatatatgattttctcaaattattagcggtgtcggtgtgttagtgtccgtgtc 38503300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 457
Target Start/End: Original strand, 39953146 - 39953236
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    ||||||||||||||| || |||| | | |||||||| ||||| |||| |||| |||||||||||| || |||||| | ||||| |||||||    
T  39953146 cgacaccgacacatacaattacactaaattatgtgattttctaaaattattagcggtgtcggcgtttccgtgtccatatccgttcttcata 39953236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 9103672 - 9103619
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtcc 447  Q
    ||||||||| ||| |||||| |||||| ||||||||||||| ||||||| ||||    
T  9103672 attatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgagtcc 9103619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 1262916 - 1262864
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| |||||||||| |||| | ||||||||||||| |||| ||||||    
T  1262916 attatgtgattttctcaaattattagctgtgtcggcgtgtccgtgttcgtgtc 1262864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 310 - 446
Target Start/End: Original strand, 4990909 - 4991046
Alignment:
Q  310 aagctatgaagtacggacactcctcggattagacgtgtcgcaatgtctgatatttacacgacaccgacacatataactacattg-attatgtgaatttct 408  Q
    ||||||||||| |||||||||||||||||||| ||||||    |||||||||   ||||||| ||||||| | ||| |||| || ||||||| | |||||    
T  4990909 aagctatgaagcacggacactcctcggattaggcgtgtccacgtgtctgataccaacacgacgccgacacttgtaattacactgaattatgtaattttct 4991008  T
Q  409 caaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||  |||| ||||||||| ||||| || ||||||||    
T  4991009 caaactattagcggtgtcggagtgtcagtctccgtgtc 4991046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 394 - 457
Target Start/End: Complemental strand, 5339140 - 5339077
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    ||||||||| |||||||||| ||||||  ||||||||||||||| ||||| | |||||||||||    
T  5339140 attatgtgattttctcaaattattaacaatgtcggcgtgtctgtatccgtattcgtgcttcata 5339077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 446
Target Start/End: Complemental strand, 8383316 - 8383237
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||||||||| ||||| |||| ||| |||| ||| |||||||||| |||| |||||||||||||||  ||||||||||    
T  8383316 cgacaccgacacttataattacactgaattatatgattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtc 8383237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 446
Target Start/End: Complemental strand, 25093561 - 25093482
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||| |||||| ||||||||||||  ||||| |||||    
T  25093561 cgacaccgacacatataattacactgaattgtgtgattttctcaaatcattaacagtgtcggcgtgttagtgtcagtgtc 25093482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 405 - 450
Target Start/End: Complemental strand, 21720785 - 21720740
Alignment:
Q  405 ttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtg 450  Q
    ||||||||| |||| ||||||||||||||| |||||||||||||||    
T  21720785 ttctcaaattattatcggtgtcggcgtgtcagtgtccgtgtccgtg 21720740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 365 - 457
Target Start/End: Original strand, 25948884 - 25948977
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    |||||||||| |||| ||||| |||| ||| |||||||| ||| |||||| |||| | || ||||| |||| ||||||||||| ||||||||||    
T  25948884 acacgacaccaacacttataattacactgaattatgtgattttttcaaattattagccgtatcggcatgtcagtgtccgtgtctgtgcttcata 25948977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 457
Target Start/End: Original strand, 13845525 - 13845613
Alignment:
Q  368 cgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    |||||||||||||||||| |||| || ||| ||||| ||||| ||| | ||||| |||||||  |||| |||||||| |||||||||||||    
T  13845525 cgacaccgacacatataattacactgcattttgtgattttctaaaaaatttaactgtgtcgg--tgtccgtgtccgtatccgtgcttcata 13845613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 457
Target Start/End: Original strand, 23870586 - 23870649
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    ||||| ||| ||| |||||| |||| |||||||| |||||| |||||||| |||||||||||||    
T  23870586 attatatgattttttcaaattattagcggtgtcgacgtgtccgtgtccgtatccgtgcttcata 23870649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 8039832 - 8039902
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    ||||||||||||||||||||| |||| || ||||| | | |||||||||| |||| |||||| ||||||||    
T  8039832 acacgacaccgacacatataattacactgaattatataattttctcaaattattagcggtgttggcgtgtc 8039902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 450
Target Start/End: Original strand, 10318035 - 10318117
Alignment:
Q  368 cgacaccgacacatataactacattgattatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtg 450  Q
    |||||||||||| ||||  |||| | |  |||||| ||| |||||| |||| | ||||||||||||| |||||||||||||||    
T  10318035 cgacaccgacacttatatttacactaaaaatgtgactttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtg 10318117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 16192747 - 16192817
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    |||||||| | |||||||||| |||| ||| |||||| | |||||||||| |||||||||||||| |||||    
T  16192747 acacgacatcaacacatataattacactgaattatgttattttctcaaattattaacggtgtcggtgtgtc 16192817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 457
Target Start/End: Complemental strand, 18427008 - 18426918
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    ||||||||||| |||||| ||||  || |||||||| ||| | |||| ||||  |||||||||||||| |||||||| || ||||||||||    
T  18427008 cgacaccgacatatataattacaccgaattatgtgattttttgaaattattagtggtgtcggcgtgtccgtgtccgtatctgtgcttcata 18426918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 394 - 456
Target Start/End: Original strand, 29112307 - 29112369
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcat 456  Q
    ||||| ||| |||||||||||||||  ||||||  |||||| |||||||| ||||||||||||    
T  29112307 attatatgattttctcaaataattagtggtgtcaacgtgtcagtgtccgtatccgtgcttcat 29112369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 34910435 - 34910401
Alignment:
Q  314 tatgaagtacggacactcctcggattagacgtgtc 348  Q
    ||||||| |||||||||||||||||||||||||||    
T  34910435 tatgaagcacggacactcctcggattagacgtgtc 34910401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 4987222 - 4987255
Alignment:
Q  315 atgaagtacggacactcctcggattagacgtgtc 348  Q
    ||||||||||||||||||||||||||| ||||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtc 4987255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 7928509 - 7928448
Alignment:
Q  368 cgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcgg 428  Q
    |||||||||||||||||| |||| || ||||||||| ||| |||||| |||| |||||||||    
T  7928509 cgacaccgacacatataattacactgaattatgtgattttttcaaattattagcggtgtcgg 7928448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 446
Target Start/End: Original strand, 24205047 - 24205120
Alignment:
Q  374 cgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||| ||||| |||| || ||||||| | |||||||||| |||| | ||||||||||||| |||||||||||    
T  24205047 cgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtc 24205120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 440
Target Start/End: Complemental strand, 35222997 - 35222924
Alignment:
Q  368 cgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtc 440  Q
    |||||||||||||||||| ||||||| ||||||||| ||||| |||   |||   |||||||||||||||||||    
T  35222997 cgacaccgacacatataattacattgaattatgtgattttctaaaaatgttagttgtgtcggcgtgtctgtgtc 35222924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 55401196 - 55401159
Alignment:
Q  311 agctatgaagtacggacactcctcggattagacgtgtc 348  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  55401196 agctatgaagcacggacactcctcggattaggcgtgtc 55401159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 442
Target Start/End: Original strand, 2620080 - 2620128
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccg 442  Q
    ||||||||| |||||||||| ||||  |||||||||||||| |||||||    
T  2620080 attatgtgattttctcaaatgattagtggtgtcggcgtgtcagtgtccg 2620128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 368 - 439
Target Start/End: Original strand, 8789550 - 8789622
Alignment:
Q  368 cgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgt 439  Q
    |||||||||||||||||| ||||  | ||||||||| |||||||||| || | | ||||||| ||||||||||    
T  8789550 cgacaccgacacatataattacacggaattatgtgattttctcaaattataagccgtgtcggtgtgtctgtgt 8789622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 8842448 - 8842408
Alignment:
Q  313 ctatgaagtacggacactcctcggattagacgtgtcgcaat 353  Q
    |||||||| |||||||||||||||||||| |||||| ||||    
T  8842448 ctatgaagcacggacactcctcggattaggcgtgtctcaat 8842408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 10268513 - 10268565
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| ||| |||||| |||||| ||||||||||||| |||||| ||||    
T  10268513 attatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccatgtc 10268565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 26290401 - 26290357
Alignment:
Q  396 tatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtc 440  Q
    ||||||| |||||||||| ||||| |||||||||||||| |||||    
T  26290401 tatgtgattttctcaaattattaatggtgtcggcgtgtcagtgtc 26290357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 434
Target Start/End: Original strand, 32804567 - 32804607
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    ||||||||| |||||||||| ||||||||||||||| ||||    
T  32804567 attatgtgattttctcaaattattaacggtgtcggcatgtc 32804607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 371 - 446
Target Start/End: Complemental strand, 23718082 - 23718006
Alignment:
Q  371 caccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||| |||| ||| |||||||| |||||||||| |||| ||||||||| ||||| |||||||||||    
T  23718082 caccgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtc 23718006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 371 - 446
Target Start/End: Complemental strand, 24105754 - 24105678
Alignment:
Q  371 caccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||| |||| ||| |||||||| |||||||||| |||| ||||||||| ||||| |||||||||||    
T  24105754 caccgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtc 24105678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 446
Target Start/End: Complemental strand, 21616813 - 21616742
Alignment:
Q  376 acacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||||||| |||| ||| |||||||| |||||||||| |||| ||||||||||||||| |||||||||||    
T  21616813 acacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtc 21616742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 37559036 - 37558954
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgt 449  Q
    |||||||||||| | ||| |||||||| |||||||| |||  ||||| |||| | ||||||||||||| ||||||||||||||    
T  37559036 cgacaccgacacttgtaattacattgaattatgtgatttttacaaattattagctgtgtcggcgtgtcagtgtccgtgtccgt 37558954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 30404877 - 30404929
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| ||| |||||| |||||| ||||||||||||| |||||||||||    
T  30404877 attatgtgattttttcaaattattaaccgtgtcggcgtgtcagtgtccgtgtc 30404929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 42832277 - 42832357
Alignment:
Q  369 gacaccgacacatataactacattgat-tatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccg 448  Q
    ||||||||||| ||||| |||| |||  ||||| | |||||||||| |||| ||||||||| ||||||| |||||||||||    
T  42832277 gacaccgacacttataattacactgaaatatgtaattttctcaaattattagcggtgtcggtgtgtctgagtccgtgtccg 42832357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 20242727 - 20242806
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||||||||||||||| |||| ||| |||||||| ||||| ||| |||||   ||||||||||||| |||||| ||||    
T  20242727 cgacaccgacacatataattacactgaattatgtgattttctaaaaaaattagttgtgtcggcgtgtcagtgtccatgtc 20242806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 457
Target Start/End: Complemental strand, 27084294 - 27084231
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    ||||| ||| |||||||||| |||| | ||||||| ||||| |||||||| |||||||||||||    
T  27084294 attatatgattttctcaaattattagcagtgtcggagtgtccgtgtccgtatccgtgcttcata 27084231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 42511318 - 42511357
Alignment:
Q  309 aaagctatgaagtacggacactcctcggattagacgtgtc 348  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  42511318 aaagctatgaagcacggacactcctcggattagccgtgtc 42511357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 450
Target Start/End: Original strand, 30527592 - 30527678
Alignment:
Q  365 acacgacaccgacacatataactaca-ttgattatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtg 450  Q
    |||||| |||||||||||||| |||| |  ||||| ||| |||||||||| |||||| |||| || ||||| ||||| |||||||||    
T  30527592 acacgataccgacacatataattacactaaattatatgattttctcaaattattaacagtgtgggtgtgtcagtgtcagtgtccgtg 30527678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 34784979 - 34785061
Alignment:
Q  365 acacgacaccgacacatataactaca-ttgattatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||||||||| |||| |  ||||||||| ||||| ||| |||||   ||||||| ||||| |||||||||||    
T  34784979 acacgacaccgacacatataattacactaaattatgtgattttctaaaaaaattagttgtgtcggtgtgtcagtgtccgtgtc 34785061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 426
Target Start/End: Complemental strand, 44860382 - 44860320
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtc 426  Q
    ||||||||||||||||||||| |||| || |||||| || |||||||||| |||| |||||||    
T  44860382 acacgacaccgacacatataattacactgaattatgcgattttctcaaattattagcggtgtc 44860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 34994017 - 34994066
Alignment:
Q  408 tcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    |||||| |||| |||||| ||||| || ||||||||||||||||||||||    
T  34994017 tcaaattattagcggtgttggcgtatcagtgtccgtgtccgtgcttcata 34994066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 434
Target Start/End: Complemental strand, 39279732 - 39279667
Alignment:
Q  370 acaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    |||||||||||||||| |||| ||| |||| ||| ||||||| || ||||||||||| ||||||||    
T  39279732 acaccgacacatataattacactgaattatttgattttctcatattattaacggtgttggcgtgtc 39279667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 410 - 446
Target Start/End: Original strand, 16069297 - 16069333
Alignment:
Q  410 aaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||| |||||||||||||||||||| |||||||||||    
T  16069297 aaattattaacggtgtcggcgtgtcagtgtccgtgtc 16069333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 457
Target Start/End: Complemental strand, 92839 - 92776
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    ||||||| | |||||||||| |||| ||||||||||||||| |||||||| |||||||||||||    
T  92839 attatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtccgtatccgtgcttcata 92776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 450
Target Start/End: Complemental strand, 3966565 - 3966478
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtcc-gtgtccgtg 450  Q
    ||||||||||||||||||||| |||| || ||| ||||| |||||||||| |||| |||||||||| |||| |||||| |||||||||    
T  3966565 acacgacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtcggcatgtcagtgtccagtgtccgtg 3966478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 445
Target Start/End: Complemental strand, 16734932 - 16734847
Alignment:
Q  363 ttacacgacaccgacacatataactaca---ttgattatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgt 445  Q
    ||||||||||||||||||||||| ||||   |||||||| | | ||||| |||| |||||||||||||||||||  ||||||||||    
T  16734932 ttacacgacaccgacacatataattacacacttgattatataattttcttaaattattaacggtgtcggcgtgttagtgtccgtgt 16734847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 434
Target Start/End: Original strand, 28588674 - 28588741
Alignment:
Q  368 cgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    |||||||||||| ||||| |||| ||| |||||||| |||||||||| |||| |||||||||||||||    
T  28588674 cgacaccgacacctataattacactgaattatgtgattttctcaaattattaccggtgtcggcgtgtc 28588741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 365 - 457
Target Start/End: Complemental strand, 39205942 - 39205849
Alignment:
Q  365 acacgacaccgacacatataactacat-tgattatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    |||||||||| |||||||||| ||||  | ||||| ||| |||||||||| |||| | |||||| |||||| ||||| || |||||||||||||    
T  39205942 acacgacaccaacacatataattacacctaattatatgattttctcaaattattagcagtgtcgacgtgtccgtgtctgtatccgtgcttcata 39205849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 365 - 457
Target Start/End: Complemental strand, 39698603 - 39698510
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    ||||||||| ||||| | ||| |||| ||| |||||||| ||| |||||| |||| | ||||| ||||||| |||||||| |||||||||||||    
T  39698603 acacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtgtccgtatccgtgcttcata 39698510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 7175046 - 7175098
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| |||||||||| |||||||||||||  ||||| |||||||||||    
T  7175046 attatgtgattttctcaaattattaacggtgtcgatgtgtcagtgtccgtgtc 7175098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 450
Target Start/End: Complemental strand, 11685999 - 11685916
Alignment:
Q  367 acgacaccgacacatataactaca-ttgattatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtg 450  Q
    ||||||||||||||||||| |||| |  |||||| || |||||||||| |||| |||||||||| |||| |||| ||||||||||    
T  11685999 acgacaccgacacatataattacactaaattatgcgactttctcaaattattagcggtgtcggcatgtcagtgt-cgtgtccgtg 11685916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 19552570 - 19552622
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| ||| |||||| |||||| ||||||||||||| |||||||||||    
T  19552570 attatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtc 19552622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 3966632 - 3966598
Alignment:
Q  314 tatgaagtacggacactcctcggattagacgtgtc 348  Q
    ||||||| |||||||||||||||||||||||||||    
T  3966632 tatgaagcacggacactcctcggattagacgtgtc 3966598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 446
Target Start/End: Complemental strand, 6401560 - 6401478
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||||||||| |||| || ||| ||||| ||||| ||| | |||   ||||||||||||| |||||||||||    
T  6401560 acacgacaccgacacatataattacactgtattttgtgattttctaaaaaatttagttgtgtcggcgtgtcggtgtccgtgtc 6401478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 456
Target Start/End: Complemental strand, 10298629 - 10298539
Alignment:
Q  367 acgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcat 456  Q
    ||||||||||||| | ||| ||||||| ||||||||| ||| |||||| ||||   ||||||||||||  |||||||  ||||||||||||    
T  10298629 acgacaccgacacttgtaattacattgtattatgtgactttttcaaattattagttgtgtcggcgtgttagtgtccgcatccgtgcttcat 10298539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 391 - 441
Target Start/End: Complemental strand, 17123083 - 17123033
Alignment:
Q  391 ttgattatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtcc 441  Q
    |||||||||||| |||||||||| |||| |||||| |||||||| ||||||    
T  17123083 ttgattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtcc 17123033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 434
Target Start/End: Complemental strand, 21814323 - 21814253
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    ||||||||||||||||||||| |||| || ||| ||||| ||||| ||| ||||| | |||||||||||||    
T  21814323 acacgacaccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtc 21814253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 340
Target Start/End: Original strand, 17593661 - 17593690
Alignment:
Q  311 agctatgaagtacggacactcctcggatta 340  Q
    ||||||||||||||||||||||||||||||    
T  17593661 agctatgaagtacggacactcctcggatta 17593690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 27144495 - 27144442
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtcc 447  Q
    ||||||||| || ||||||| |||| ||||||||||||||| ||||| ||||||    
T  27144495 attatgtgatttcctcaaattattagcggtgtcggcgtgtcagtgtctgtgtcc 27144442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 457
Target Start/End: Complemental strand, 42893418 - 42893329
Alignment:
Q  369 gacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    ||||||||||| | ||| |||| || ||||||||| ||| |||||| |||| | ||||||| ||||| |||||| | |||||||||||||    
T  42893418 gacaccgacacttgtaattacactggattatgtgattttttcaaattattagctgtgtcggtgtgtccgtgtccatatccgtgcttcata 42893329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 440
Target Start/End: Complemental strand, 2436984 - 2436908
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtc 440  Q
    |||||||||||||||||||||  |||  || |||||||| |||  ||||| |||| ||||||||||||||| |||||    
T  2436984 acacgacaccgacacatataatcacaacgaattatgtgatttttgcaaattattagcggtgtcggcgtgtcagtgtc 2436908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 440
Target Start/End: Complemental strand, 6035544 - 6035469
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtc 440  Q
    |||||||||||||| |||||| |||| ||| |||| | | |||||||||| |||| ||||||||||||||| |||||    
T  6035544 acacgacaccgacaaatataattacactgaattatatta-tttctcaaattattagcggtgtcggcgtgtcagtgtc 6035469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 9449501 - 9449449
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| |||||||||| ||||  |||||||||||| | |||||||||||    
T  9449501 attatgtgattttctcaaattattattggtgtcggcgtgccagtgtccgtgtc 9449449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 14674301 - 14674249
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| ||| |||||| |||| | ||||||||||||| |||||||||||    
T  14674301 attatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 14674249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 21576684 - 21576720
Alignment:
Q  312 gctatgaagtacggacactcctcggattagacgtgtc 348  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  21576684 gctatgaagcacggacactcctcggattaggcgtgtc 21576720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 440
Target Start/End: Complemental strand, 31084385 - 31084309
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtc 440  Q
    |||||||| |||||| | ||| |||||||| |||||||| ||| |||||| |||| | ||||||||||||| |||||    
T  31084385 acacgacatcgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 31084309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 365 - 457
Target Start/End: Original strand, 9744 - 9835
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    ||||||||||||||||||||| |||| || |||| |||| |||||||||| ||||  || |||||| |||||||||  ||||||||||||||||    
T  9744 acacgacaccgacacatataattacactgaattaagtgattttctcaaattattagtggcgtcggcatgtctgtgt--gtgtccgtgcttcata 9835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 365 - 457
Target Start/End: Original strand, 22234887 - 22234981
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttct-caaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    |||||||||||||||||| || |||| ||| |||||||| ||| | |||||  ||| ||||||||||||||| |||||||| |||||||||||||    
T  22234887 acacgacaccgacacatagaattacactgaattatgtgatttttttcaaatttttagcggtgtcggcgtgtccgtgtccgtatccgtgcttcata 22234981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 366 - 446
Target Start/End: Complemental strand, 13783342 - 13783261
Alignment:
Q  366 cacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||||||| ||||||||| |||| ||| || |||||  |||||||||||||| ||||||||| ||||| |||||||||||    
T  13783342 cacgacaccggcacatataattacactgaattttgtgatcttctcaaataattagcggtgtcggtgtgtcagtgtccgtgtc 13783261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 367 - 440
Target Start/End: Original strand, 35723383 - 35723458
Alignment:
Q  367 acgacaccgacacatataactacattga-ttatgtgaattt-ctcaaataattaacggtgtcggcgtgtctgtgtc 440  Q
    ||||||| ||||||||||| |||||||| ||||||| |||| ||||||| |||| ||||||||||||||| |||||    
T  35723383 acgacactgacacatataattacattgaattatgtgtattttctcaaattattagcggtgtcggcgtgtcagtgtc 35723458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 5414169 - 5414251
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||||||||| |||||||| |||| || ||| ||||| ||||| ||| ||||| | ||||||||||||| |||||||||||    
T  5414169 acacgacaccgatacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtccgtgtccgtgtc 5414251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 446
Target Start/End: Complemental strand, 40742653 - 40742571
Alignment:
Q  365 acacgacaccgacacatataactacatt-gattatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||||| |||||||||||| |||| | |||||| ||| |||||||||| ||||| ||||||||||| ||  ||||||||||    
T  40742653 acacgacatcgacacatataattacactagattatatgattttctcaaattattaatggtgtcggcgtttcaatgtccgtgtc 40742571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 450
Target Start/End: Complemental strand, 46160958 - 46160873
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtg 450  Q
    |||||||||||||||||||||  ||| ||| |||||| | ||||||| ||  ||||||| |||||||||||||||| ||||||||||    
T  46160958 acacgacaccgacacatataataacactgaattatgttattttctcatatttttaacggcgtcggcgtgtctgtgt-cgtgtccgtg 46160873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 7012098 - 7012045
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtcc 447  Q
    ||||||| | |||||||||| |||| ||||||||||||||| ||||||||||||    
T  7012098 attatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtccgtgtcc 7012045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 30982875 - 30982954
Alignment:
Q  365 acacgacaccgacacatataactacattgat-tatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||| ||||| |||| |||  ||||||| |||||||||| |||| |||||   |||||||||||||||||||    
T  30982875 acacgacaccgacacttataattacactgaaatatgtgattttctcaaatcattagcggtg---gcgtgtctgtgtccgtgtc 30982954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 824212 - 824251
Alignment:
Q  309 aaagctatgaagtacggacactcctcggattagacgtgtc 348  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  824212 aaagctatgaagcacggacagtcctcggattagacgtgtc 824251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 427
Target Start/End: Original strand, 5775359 - 5775418
Alignment:
Q  369 gacaccgacacatataactaca-ttgattatgtgaatttctcaaataattaacggtgtcg 427  Q
    ||||||||||||||||| |||| || ||||||||| |||||||||| ||||| |||||||    
T  5775359 gacaccgacacatataattacacttaattatgtgattttctcaaattattaatggtgtcg 5775418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 348
Target Start/End: Complemental strand, 30299048 - 30299013
Alignment:
Q  313 ctatgaagtacggacactcctcggattagacgtgtc 348  Q
    |||||||| |||||||||||||||||||||||||||    
T  30299048 ctatgaagcacggacactcctcggattagacgtgtc 30299013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 348
Target Start/End: Complemental strand, 30327916 - 30327881
Alignment:
Q  313 ctatgaagtacggacactcctcggattagacgtgtc 348  Q
    |||||||| |||||||||||||||||||||||||||    
T  30327916 ctatgaagcacggacactcctcggattagacgtgtc 30327881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 418
Target Start/End: Original strand, 11596297 - 11596403
Alignment:
Q  313 ctatgaagtacggacactcctcggattagacgtgtcgcaatgtctgatatttacacgacaccgacacatataactacattg-attatgtgaatttctcaa 411  Q
    |||||||| ||||||||||||| |||||| |||||| | ||||| || | | |||||||||| |||| | ||| |||| || ||||||||| ||| ||||    
T  11596297 ctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacaatgacacgacacctacacttgtaattacactgaattatgtgattttttcaa 11596396  T
Q  412 ataatta 418  Q
    || ||||    
T  11596397 attatta 11596403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 434
Target Start/End: Complemental strand, 40613504 - 40613442
Alignment:
Q  373 ccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    ||||||||||||| |||| ||| |||||||| |||||||||  |||| |||||||||||||||    
T  40613504 ccgacacatataattacactgaattatgtgattttctcaaaatattagcggtgtcggcgtgtc 40613442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 12884347 - 12884380
Alignment:
Q  313 ctatgaagtacggacactcctcggattagacgtg 346  Q
    |||||||| |||||||||||||||||||||||||    
T  12884347 ctatgaagcacggacactcctcggattagacgtg 12884380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 457
Target Start/End: Original strand, 46083988 - 46084080
Alignment:
Q  365 acacgacaccgacacatataactaca-ttgattatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgtgcttcata 457  Q
    ||||||||||||||||||||| |||| | |||||||||| || || ||| ||||| | ||||| | ||||| |||||||| ||| |||||||||    
T  46083988 acacgacaccgacacatataattacactagattatgtgatttactaaaacaattagctgtgtccg-gtgtccgtgtccgtatccatgcttcata 46084080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 20521876 - 20521928
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| ||| |||||| |||| |||| |||||||||| |||||||||||    
T  20521876 attatgtgattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtc 20521928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 365 - 433
Target Start/End: Complemental strand, 28912 - 28843
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgt 433  Q
    |||| |||||||||||||||| |||||||| ||||| || ||||| |||| |||||||||||||||||||    
T  28912 acacaacaccgacacatataattacattgaattatgcgattttcttaaattattaacggtgtcggcgtgt 28843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 1676 - 1630
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtc 440  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  1676 attatatgattttctcaaattattaacggtgtcggcgtgtctgtgtc 1630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 192276 - 192325
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgt 443  Q
    ||||||| | |||||||||| |||||||||||||||||||| ||||||||    
T  192276 attatgtaattttctcaaattattaacggtgtcggcgtgtcagtgtccgt 192325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 374 - 446
Target Start/End: Original strand, 225274 - 225347
Alignment:
Q  374 cgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||| ||||| ||||||| ||||||| | |||||||||| |||| | ||||||||||||| |||||||||||    
T  225274 cgacacttataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtc 225347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 449
Target Start/End: Complemental strand, 51843 - 51788
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtccgt 449  Q
    ||||||||| ||| |||||| |||| | ||||||||||||| ||||||||||||||    
T  51843 attatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgt 51788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 446
Target Start/End: Complemental strand, 21105 - 21023
Alignment:
Q  365 acacgacaccgacacatataactacattga-ttatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    |||||| |||||||||||||| || |  || |||||||| |||||||||| |||||| ||||| || |||| |||||||||||    
T  21105 acacgataccgacacatataattataccgacttatgtgattttctcaaattattaaccgtgtcagcatgtcagtgtccgtgtc 21023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 135309 - 135391
Alignment:
Q  365 acacgacaccgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||||||||||||||| ||||  | ||||||||| |||||||||| |||| | ||||||| ||||  ||||| |||||    
T  135309 acacgacaccgacacatataattacacagaattatgtgattttctcaaattattagcagtgtcggtgtgttggtgtctgtgtc 135391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 341
Target Start/End: Complemental strand, 13544 - 13515
Alignment:
Q  312 gctatgaagtacggacactcctcggattag 341  Q
    ||||||||||||||||||||||||||||||    
T  13544 gctatgaagtacggacactcctcggattag 13515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 434
Target Start/End: Complemental strand, 26446 - 26385
Alignment:
Q  374 cgacacatataactacattg-attatgtgaatttctcaaataattaacggtgtcggcgtgtc 434  Q
    ||||||||||||| |||||| ||||||||| |||||||||| ||||  ||||||| ||||||    
T  26446 cgacacatataacgacattgaattatgtgattttctcaaattattagtggtgtcgacgtgtc 26385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 13432 - 13380
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| |||||||||| ||||   ||||||||||||| |||||||||||    
T  13432 attatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 13380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 21895 - 21947
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| |||||||||| ||||   ||||||||||||| |||||||||||    
T  21895 attatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 21947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 46714 - 46662
Alignment:
Q  394 attatgtgaatttctcaaataattaacggtgtcggcgtgtctgtgtccgtgtc 446  Q
    ||||||||| ||| |||||| |||||| |||||||||||||  ||||||||||    
T  46714 attatgtgattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtc 46662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 46776 - 46740
Alignment:
Q  313 ctatgaagtacggacactcctcggattagacgtgtcg 349  Q
    |||||||| |||||||||||||||||||| |||||||    
T  46776 ctatgaagcacggacactcctcggattaggcgtgtcg 46740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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