View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0840_low_31 (Length: 275)

Name: NF0840_low_31
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0840_low_31
NF0840_low_31
[»] chr1 (4 HSPs)
chr1 (49-266)||(15195981-15196198)
chr1 (49-266)||(15216399-15216616)
chr1 (49-266)||(15195330-15195547)
chr1 (49-266)||(15215748-15215965)
[»] chr5 (5 HSPs)
chr5 (49-270)||(17563494-17563715)
chr5 (68-270)||(17570590-17570792)
chr5 (119-241)||(17621843-17621965)
chr5 (84-271)||(17683602-17683789)
chr5 (119-271)||(17690563-17690715)
[»] chr7 (5 HSPs)
chr7 (49-270)||(14764884-14765105)
chr7 (68-270)||(14757743-14757945)
chr7 (79-241)||(14749835-14749997)
chr7 (119-271)||(14661472-14661624)
chr7 (119-271)||(14653037-14653189)
[»] chr8 (1 HSPs)
chr8 (49-271)||(24395304-24395526)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 49 - 266
Target Start/End: Original strand, 15195981 - 15196198
Alignment:
Q  49 aacaagctgcttaccatagtctctaatgtatgaagtcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatc 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15195981 aacaagctgcttaccatagtctctaatgtatgaagtcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatc 15196080  T
Q  149 aaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagcatttgattttcgatcatctccttctctacca 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  15196081 aaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagcatgtgattttcgatcatctccttctccacca 15196180  T
Q  249 cagtagtaatcttctttt 266  Q
    || |||||||||||||||    
T  15196181 caatagtaatcttctttt 15196198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 49 - 266
Target Start/End: Original strand, 15216399 - 15216616
Alignment:
Q  49 aacaagctgcttaccatagtctctaatgtatgaagtcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatc 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15216399 aacaagctgcttaccatagtctctaatgtatgaagtcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatc 15216498  T
Q  149 aaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagcatttgattttcgatcatctccttctctacca 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  15216499 aaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagcatgtgattttcgatcatctccttctccacca 15216598  T
Q  249 cagtagtaatcttctttt 266  Q
    || |||||||||||||||    
T  15216599 caatagtaatcttctttt 15216616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 49 - 266
Target Start/End: Original strand, 15195330 - 15195547
Alignment:
Q  49 aacaagctgcttaccatagtctctaatgtatgaagtcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatc 148  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15195330 aacaagctgcttactgtagtctctaatgtatgaagtaatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctactc 15195429  T
Q  149 aaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagcatttgattttcgatcatctccttctctacca 248  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||||    
T  15195430 aaatcttcatacttatcatcaccaatcatgtttactaacccagagttctccataaggattaatctaatcatgtgattttcgatcatctccttctccacca 15195529  T
Q  249 cagtagtaatcttctttt 266  Q
    || |||||||||||||||    
T  15195530 caatagtaatcttctttt 15195547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 49 - 266
Target Start/End: Original strand, 15215748 - 15215965
Alignment:
Q  49 aacaagctgcttaccatagtctctaatgtatgaagtcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatc 148  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15215748 aacaagctgcttactgtagtctctaatgtatgaagtaatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctactc 15215847  T
Q  149 aaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagcatttgattttcgatcatctccttctctacca 248  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||||    
T  15215848 aaatcttcatacttatcatcaccaatcatgtttactaacccagagttctccataaggattaatctaatcatgtgattttcgatcatctccttctccacca 15215947  T
Q  249 cagtagtaatcttctttt 266  Q
    || |||||||||||||||    
T  15215948 caatagtaatcttctttt 15215965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 49 - 270
Target Start/End: Complemental strand, 17563715 - 17563494
Alignment:
Q  49 aacaagctgcttaccatagtctctaatgtatgaagtcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatc 148  Q
    ||||||||||||||| | |||| | | |||||||||||||||||| ||||||| | |||||||| |||||||||||| ||||||||||||||| |||  |    
T  17563715 aacaagctgcttaccgtggtctttgacgtatgaagtcatcacttcacgtattttcaagagaccatcggtgacacgactgaacaagttatacatcctaccc 17563616  T
Q  149 aaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagcatttgattttcgatcatctccttctctacca 248  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||  ||||| ||| ||||||||||||||| |||||||||| |||||||||||| ||||    
T  17563615 aaatcttcatatttatcatcaccaagcatgtttactaacccagaagtctccttatagattaatctaagcatgtgattttcgagcatctccttctccacca 17563516  T
Q  249 cagtagtaatcttcttttcagt 270  Q
     ||||||||||||| |||||||    
T  17563515 gagtagtaatcttcgtttcagt 17563494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 68 - 270
Target Start/End: Complemental strand, 17570792 - 17570590
Alignment:
Q  68 tctctaatgtatgaagtcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatcaaatctttatacttatcat 167  Q
    ||||| |||| ||||||| ||||||| ||||||| ||||||||||   || |||||||| |||||||||||||||||   |||||||| ||| ||||||     
T  17570792 tctctgatgtgtgaagtcgtcacttcacgtattttcgagagaccattagtaacacgacgaaacaagttatacattcttcccaaatcttcatatttatcac 17570693  T
Q  168 caccaatcatgtttactaacccagagttctccatatggattaatctaagcatttgattttcgatcatctccttctctaccacagtagtaatcttcttttc 267  Q
    ||| || ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||| ||||||||||||||||    
T  17570692 cacaaagcatgtttactaaccccgagttctccatatggattaatctaagcatgtgattttcaatcatctccttctcgatcacactagtaatcttcttttc 17570593  T
Q  268 agt 270  Q
    |||    
T  17570592 agt 17570590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 17621843 - 17621965
Alignment:
Q  119 acacgacggaacaagttatacattctaatcaaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagca 218  Q
    |||||||||||||||||||||||||||  ||| |||| ||| |||||| ||| ||||||||||||||||||||| || ||||||||||||||||||||||    
T  17621843 acacgacggaacaagttatacattctacccaagtcttcatatttatcaccacaaatcatgtttactaacccagaattttccatatggattaatctaagca 17621942  T
Q  219 tttgattttcgatcatctccttc 241  Q
    | | |||||| || |||||||||    
T  17621943 tgtcattttcaataatctccttc 17621965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 271
Target Start/End: Original strand, 17683602 - 17683789
Alignment:
Q  84 tcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatcaaatctttatacttatcatcaccaatcatgtttac 183  Q
    ||||| ||||| ||||||  ||||||||| | |  || |||||||||||||||||||||||   |||||||| ||| |||| | ||| || |||||||||    
T  17683602 tcatcgcttcttgtatttttgagagaccatcaggaacccgacggaacaagttatacattctttccaaatcttcatatttattaccacaaagcatgtttac 17683701  T
Q  184 taacccagagttctccatatggattaatctaagcatttgattttcgatcatctccttctctaccacagtagtaatcttcttttcagtc 271  Q
     ||||||||||||||||||| ||||||||| |||||  ||||||| |||||||||||||| | | || || |||| ||||||||||||    
T  17683702 aaacccagagttctccatattgattaatctcagcatgggattttcaatcatctccttctcgatcgcattaataattttcttttcagtc 17683789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 271
Target Start/End: Original strand, 17690563 - 17690715
Alignment:
Q  119 acacgacggaacaagttatacattctaatcaaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagca 218  Q
    ||||| ||||||||||||||||||||   |||||||| ||| |||  | ||| |||||||||||| ||||||||||||||||||| |||||||||| |||    
T  17690563 acacgtcggaacaagttatacattctttccaaatcttcatatttagtaccacaaatcatgtttacaaacccagagttctccatattgattaatctaggca 17690662  T
Q  219 tttgattttcgatcatctccttctctaccacagtagtaatcttcttttcagtc 271  Q
    |  ||||||| |||||||||||||| | | || || |||| ||||||||||||    
T  17690663 tgggattttcaatcatctccttctcgatcgcattaataattttcttttcagtc 17690715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 49 - 270
Target Start/End: Original strand, 14764884 - 14765105
Alignment:
Q  49 aacaagctgcttaccatagtctctaatgtatgaagtcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatc 148  Q
    ||||||||||||||| | |||| | |  ||||||||||||||||| ||||||| | |||||||| |||||||||||| ||||||||||||||| |||  |    
T  14764884 aacaagctgcttaccgttgtctttgacttatgaagtcatcacttcacgtattttcaagagaccatcggtgacacgactgaacaagttatacatcctaccc 14764983  T
Q  149 aaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagcatttgattttcgatcatctccttctctacca 248  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||  ||||| ||| ||||||||||||||| |||||||||| |||||||||||| ||||    
T  14764984 aaatcttcatatttatcatcaccaagcatgtttactaacccagaagtctccttatagattaatctaagcatgtgattttcgagcatctccttctccacca 14765083  T
Q  249 cagtagtaatcttcttttcagt 270  Q
     ||||||||| ||| |||||||    
T  14765084 gagtagtaattttcgtttcagt 14765105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 68 - 270
Target Start/End: Original strand, 14757743 - 14757945
Alignment:
Q  68 tctctaatgtatgaagtcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatcaaatctttatacttatcat 167  Q
    ||||| |||| ||||||| ||||||| ||||||| ||||||||||   || |||||||| |||||||||||||||||   |||||||| ||| ||||||     
T  14757743 tctctgatgtgtgaagtcgtcacttcacgtattttcgagagaccattagtaacacgacgaaacaagttatacattcttcccaaatcttcatatttatcac 14757842  T
Q  168 caccaatcatgtttactaacccagagttctccatatggattaatctaagcatttgattttcgatcatctccttctctaccacagtagtaatcttcttttc 267  Q
    ||| || ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||| ||||||||||||||||    
T  14757843 cacaaagcatgtttactaaccccgagttctccatatggattaatctaagcatgtgattttcaatcatctccttctcgatcacactagtaatcttcttttc 14757942  T
Q  268 agt 270  Q
    |||    
T  14757943 agt 14757945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 241
Target Start/End: Original strand, 14749835 - 14749997
Alignment:
Q  79 tgaagtcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatcaaatctttatacttatcatcaccaatcatg 178  Q
    ||||||||||||||| ||||||| | |||||||| | |  |||||| ||||||||||||||||||||  |||||| ||||| |||||| ||| || ||||    
T  14749835 tgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaagttatacattctacccaaatcgttatatttatcaccacaaagcatg 14749934  T
Q  179 tttactaacccagagttctccatatggattaatctaagcatttgattttcgatcatctccttc 241  Q
    |||||||||||||| |||| ||  ||||||||||||||||| |||||||| ||  ||||||||    
T  14749935 tttactaacccagaattctgcaattggattaatctaagcatgtgattttcaatagtctccttc 14749997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 119 - 271
Target Start/End: Complemental strand, 14661624 - 14661472
Alignment:
Q  119 acacgacggaacaagttatacattctaatcaaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagca 218  Q
    ||||||||||||||||||||||||||   |||||||| ||| |||| | ||| || ||||||||| ||||||||||||||||||| ||||||||| ||||    
T  14661624 acacgacggaacaagttatacattctttccaaatcttcatatttattaccacaaagcatgtttacaaacccagagttctccatattgattaatctcagca 14661525  T
Q  219 tttgattttcgatcatctccttctctaccacagtagtaatcttcttttcagtc 271  Q
    |  ||||||| |||||||||||||| | | || || |||| ||||||||||||    
T  14661524 tgggattttcaatcatctccttctcgatcgcattaataattttcttttcagtc 14661472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 271
Target Start/End: Complemental strand, 14653189 - 14653037
Alignment:
Q  119 acacgacggaacaagttatacattctaatcaaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagca 218  Q
    ||||| ||||||||||||||||||||   |||||||| ||| |||  | ||| || ||||||||| ||||||||||||||||||| ||||||||| ||||    
T  14653189 acacgtcggaacaagttatacattctttccaaatcttcatatttagtaccacaaagcatgtttacaaacccagagttctccatattgattaatctcagca 14653090  T
Q  219 tttgattttcgatcatctccttctctaccacagtagtaatcttcttttcagtc 271  Q
    |  ||||||| |||||||||||||| | | || || |||| ||||||||||||    
T  14653089 tgggattttcaatcatctccttctcgatcgcattaataattttcttttcagtc 14653037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 49 - 271
Target Start/End: Original strand, 24395304 - 24395526
Alignment:
Q  49 aacaagctgcttaccatagtctctaatgtatgaagtcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatc 148  Q
    ||||||||| |||||| | || || |||| | |||||||||| |||||||||| | | |||||  |||  ||||| ||||||||||||||||| |||  |    
T  24395304 aacaagctgtttaccagattcccttatgtgtaaagtcatcacctctcgtattttcaaaagaccgtcggctacacggcggaacaagttatacatcctaccc 24395403  T
Q  149 aaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagcatttgattttcgatcatctccttctctacca 248  Q
    ||||||| ||| |||||||||| || |||||| ||||| ||||| ||||||||||||||||| || ||||| |||||||| ||||||| | |||| ||||    
T  24395404 aaatcttcatatttatcatcacaaagcatgttgactaaaccagaattctccatatggattaacctgagcatgtgattttcaatcatctgcgtctccacca 24395503  T
Q  249 cagtagtaatcttcttttcagtc 271  Q
    |  || |||||||||||||||||    
T  24395504 ctttattaatcttcttttcagtc 24395526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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