View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0840_low_38 (Length: 251)
Name: NF0840_low_38
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_low_38 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 13461935 - 13461699
Alignment:
| Q |
15 |
tatggagacaataaaccacgacctgatgatcttttgagatatctcaaaaccctcaagattgtaaaagggtgagtctcatagctgaagccataacacgact |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13461935 |
tatggagacaataaaccacgacctgatgatcttttgagatatctcaaaaccctcaagattgtaaaagggtgagtctcatagctgaagccataacacgact |
13461836 |
T |
|
| Q |
115 |
caaccattgagctaaaaaggctatgtctatttatataaatgactcaaccgttgagcagcaatggctatgtctgttcatataaaagactcgactgttgagc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
13461835 |
caaccattgagctaaaaaggctatgtctattcatataaatgactcaaccgttgagcagcaatggctatgtctgttcatataaaagactcaaccattgagc |
13461736 |
T |
|
| Q |
215 |
agcaaaggctatgtttgttcatataaatgactcaacc |
251 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13461735 |
agcaaaggctatgtctgttcatataaatgactcaacc |
13461699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 13461795 - 13461655
Alignment:
| Q |
111 |
gactcaaccattgagctaaaaaggctatgtctatttatataaatgactcaaccgttgagcagcaatggctatgtctgttcatataaaagactcgactgtt |
210 |
Q |
| |
|
||||||||| |||||| || |||||||||| || ||||||| ||||||||| ||||||||||| ||||||||||||||||||||| ||||| || ||| |
|
|
| T |
13461795 |
gactcaaccgttgagcagcaatggctatgtctgttcatataaaagactcaaccattgagcagcaaaggctatgtctgttcatataaatgactcaaccgtt |
13461696 |
T |
|
| Q |
211 |
gagcagcaaaggctatgtttgttcatataaatgactcaacc |
251 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13461695 |
gagcagcaacggctatgtttgttcatataaatgactcaacc |
13461655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 13461751 - 13461632
Alignment:
| Q |
111 |
gactcaaccattgagctaaaaaggctatgtctatttatataaatgactcaaccgttgagcagcaatggctatgtctgttcatataaaagactcgactgtt |
210 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| || ||| |
|
|
| T |
13461751 |
gactcaaccattgagcagcaaaggctatgtctgttcatataaatgactcaaccgttgagcagcaacggctatgtttgttcatataaatgactcaaccgtt |
13461652 |
T |
|
| Q |
211 |
gagcagcaaaggctatgttt |
230 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13461651 |
gagcagcaaaggctatgttt |
13461632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1821 times since January 2019
Visitors: 6150