View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0840_low_4 (Length: 612)

Name: NF0840_low_4
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0840_low_4
NF0840_low_4
[»] chr4 (5 HSPs)
chr4 (31-601)||(39242122-39242692)
chr4 (441-516)||(18628478-18628553)
chr4 (454-521)||(39178186-39178253)
chr4 (447-520)||(37636107-37636180)
chr4 (453-521)||(18020041-18020109)
[»] chr3 (2 HSPs)
chr3 (441-521)||(49845460-49845540)
chr3 (489-521)||(46478785-46478817)
[»] chr1 (1 HSPs)
chr1 (441-520)||(5157142-5157221)
[»] chr8 (3 HSPs)
chr8 (454-521)||(10062061-10062128)
chr8 (460-521)||(2606138-2606199)
chr8 (441-521)||(8060739-8060818)
[»] scaffold0020 (1 HSPs)
scaffold0020 (479-521)||(159893-159935)
[»] chr2 (3 HSPs)
chr2 (441-474)||(39962266-39962299)
chr2 (453-521)||(3059207-3059275)
chr2 (441-521)||(15120253-15120333)
[»] chr7 (1 HSPs)
chr7 (447-527)||(1418495-1418575)


Alignment Details
Target: chr4 (Bit Score: 567; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 31 - 601
Target Start/End: Original strand, 39242122 - 39242692
Alignment:
Q  31 tagtttcttattatataatagatatgctttattaaagatgagattttctaagtacattttctttctctaattgaacctagcatagcaggttcaatgattt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39242122 tagtttcttattatataatagatatgctttattaaagatgagattttctaagtacattttctttctctaattgaacctagcatagcaggttcaatgattt 39242221  T
Q  131 attctgcttcttatggttctatcaagcaataaattttctcattattttcctttaacagtgctatagggaagtgactaagggcatgtatggagatcttggc 230  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39242222 attctgcttcttatgtttctatcaagcaataaattttctcattattttcctttaacagtgctatagggaagtgactaagggcatgtatggagatcttggc 39242321  T
Q  231 aaagttatggaaggattcaaccagtggtatgaagaaataggagtttctatttatcttcattcctccacacaaataaccacactctcccttcaatttttag 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39242322 aaagttatggaaggattcaaccagtggtatgaagaaataggagtttctatttatcttcattcctccacacaaataaccacactctcccttcaatttttag 39242421  T
Q  331 ctgaataaatgaatattatgatatgcttttaatcctaaatgtctggttaattggccctatttagataaacaacttaattaagttgttttcataaatgaga 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39242422 ctgaataaatgaatattatgatatgcttttaatcctaaatgtctggttaattggccctatttagataaacaacttaattaagttgttttcataaatgaga 39242521  T
Q  431 gcttgtggaaataaattgtttatataagctctcccaaacagttttattagtgtttatattagtagatatgctcaaatatgtcaatccaaaccagtccaaa 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39242522 gcttgtggaaataaattgtttatataagctctcccaaacagttttattagtgtttatattagtagatatgctcaaatatgtcaatccaaaccagtccaaa 39242621  T
Q  531 gaatattcactcaattagatggatgccaaggcttacctttgctttcgatcttctttcactttttgtttcat 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39242622 gaatattcactcaattagatggatgccaaggcttacctttgctttcgatcttctttcactttttgtttcat 39242692  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 516
Target Start/End: Complemental strand, 18628553 - 18628478
Alignment:
Q  441 ataaattgtttatataagctctcccaaacagttttattagtgtttatattagtagatatgctcaaatatgtcaatc 516  Q
    |||| ||||||  ||||||||||||||||||| | |  ||||||||| | |||||||| ||||||||| |||||||    
T  18628553 ataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaatacgtcaatc 18628478  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 521
Target Start/End: Complemental strand, 39178253 - 39178186
Alignment:
Q  454 ataagctctcccaaacagttttattagtgtttatattagtagatatgctcaaatatgtcaatccaaac 521  Q
    ||||| ||||||||||||| | |  ||||||||| | |||||||||||| ||||| ||||||||||||    
T  39178253 ataagttctcccaaacagtgtcaaaagtgtttatgtcagtagatatgcttaaatacgtcaatccaaac 39178186  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 520
Target Start/End: Complemental strand, 37636180 - 37636107
Alignment:
Q  447 tgtttatataagctctcccaaacagttttattagtgtttatattagtagatatgctcaaatatgtcaatccaaa 520  Q
    ||||| ||||| ||||||||||||||||||   ||| |||| ||||||||||  ||||||||  ||||||||||    
T  37636180 tgtttctataaactctcccaaacagttttacaggtgcttatgttagtagataaactcaaataaatcaatccaaa 37636107  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 521
Target Start/End: Original strand, 18020041 - 18020109
Alignment:
Q  453 tataagctctcccaaacagttttattagtgtttatattagtagatatgctcaaatatgtcaatccaaac 521  Q
    ||||||||||||||||||||||  | ||||||||| || ||| |||  |||||||| ||| ||||||||    
T  18020041 tataagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaac 18020109  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 521
Target Start/End: Complemental strand, 49845540 - 49845460
Alignment:
Q  441 ataaattgtttatataagctctcccaaacagttttattagtgtttatattagtagatatgctcaaatatgtcaatccaaac 521  Q
    |||| ||||||  ||||||||||||||| ||||| || ||| |||||| ||||| ||| ||||||||| ||||||||||||    
T  49845540 ataagttgtttccataagctctcccaaatagtttcataagtttttatactagtatataagctcaaataagtcaatccaaac 49845460  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 489 - 521
Target Start/End: Original strand, 46478785 - 46478817
Alignment:
Q  489 ttagtagatatgctcaaatatgtcaatccaaac 521  Q
    |||||||||||||||||||| ||||||||||||    
T  46478785 ttagtagatatgctcaaataagtcaatccaaac 46478817  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 441 - 520
Target Start/End: Original strand, 5157142 - 5157221
Alignment:
Q  441 ataaattgtttatataagctctcccaaacagttttattagtgtttatattagtagatatgctcaaatatgtcaatccaaa 520  Q
    |||| |||||| |||||||||||||||||||||| |  ||||||||| |  ||||||| | ||||||| |||||||||||    
T  5157142 ataagttgtttctataagctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtcaatccaaa 5157221  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 521
Target Start/End: Complemental strand, 10062128 - 10062061
Alignment:
Q  454 ataagctctcccaaacagttttattagtgtttatattagtagatatgctcaaatatgtcaatccaaac 521  Q
    ||||||||||||||| |||||  | |||||| || |||||||||| ||||||||| | ||||||||||    
T  10062128 ataagctctcccaaatagtttcgtaagtgttgatgttagtagataagctcaaataagccaatccaaac 10062061  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 521
Target Start/End: Original strand, 2606138 - 2606199
Alignment:
Q  460 tctcccaaacagttttattagtgtttatattagtagatatgctcaaatatgtcaatccaaac 521  Q
    ||||||||||||||| | ||||| |||| | |||||||| |||| |||| ||||||||||||    
T  2606138 tctcccaaacagtttcactagtgattatgtcagtagataagctcgaataagtcaatccaaac 2606199  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 441 - 521
Target Start/End: Original strand, 8060739 - 8060818
Alignment:
Q  441 ataaattgtttatataagctctcccaaacagttttattagtgtttatattagtagatatgctcaaatatgtcaatccaaac 521  Q
    |||| ||||||  |||||||||| ||||||||||    ||||||||| | | |||||||||||||||| ||||||||||||    
T  8060739 ataatttgttttcataagctctctcaaacagtttcga-agtgtttatgtcaatagatatgctcaaataagtcaatccaaac 8060818  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 521
Target Start/End: Complemental strand, 159935 - 159893
Alignment:
Q  479 agtgtttatattagtagatatgctcaaatatgtcaatccaaac 521  Q
    |||||||||||||||||||| ||||||||| | ||||||||||    
T  159935 agtgtttatattagtagataagctcaaataagccaatccaaac 159893  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 474
Target Start/End: Complemental strand, 39962299 - 39962266
Alignment:
Q  441 ataaattgtttatataagctctcccaaacagttt 474  Q
    ||||||||||| ||||||||||||||||||||||    
T  39962299 ataaattgtttctataagctctcccaaacagttt 39962266  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 521
Target Start/End: Complemental strand, 3059275 - 3059207
Alignment:
Q  453 tataagctctcccaaacagttttattagtgtttatattagtagatatgctcaaatatgtcaatccaaac 521  Q
    ||||||||||||||||||||||  | ||||||||| || ||| |||  |||||||| ||| ||||||||    
T  3059275 tataagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaac 3059207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 441 - 521
Target Start/End: Original strand, 15120253 - 15120333
Alignment:
Q  441 ataaattgtttatataagctctcccaaacagttttattagtgtttatattagtagatatgctcaaatatgtcaatccaaac 521  Q
    |||| ||||||  |||||||||||||||||| || |  | |||||||  ||||||||| | ||||||| ||||||||||||    
T  15120253 ataagttgtttccataagctctcccaaacagattcacaactgtttatgctagtagataagttcaaataagtcaatccaaac 15120333  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 527
Target Start/End: Original strand, 1418495 - 1418575
Alignment:
Q  447 tgtttatataagctctcccaaacagttttattagtgtttatattagtagatatgctcaaatatgtcaatccaaaccagtcc 527  Q
    ||||| ||||||||||| |||||||  | || |||| ||||   |||||||| ||||||||| |||||||||||| |||||    
T  1418495 tgtttctataagctctcacaaacagcctcataagtgcttatgccagtagataagctcaaataagtcaatccaaacaagtcc 1418575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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