View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0840_low_41 (Length: 250)
Name: NF0840_low_41
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 17866108 - 17866320
Alignment:
| Q |
21 |
caaataaaaatgaccaaattatagagttttgtaaaatggaaggaaaggttaataaagccttacaattagagcagctgagcggcaaaatgcagctccacta |
120 |
Q |
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| T |
17866108 |
caaataaaaatgaccaaattatagagttttgtaaaatggaaggcaaggttaataaagccttacaattagagcagctgagcggcaaaatgcagctccacta |
17866207 |
T |
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| Q |
121 |
gcattagaagcagcatactcatcatattcagcatccaggaattgacgttctgcctctgcaatcgccaaaagtcgaggatcacgcaagtccaagggtgagc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17866208 |
gcattagaagcagcatactcatcatattcagcatccaggaattgacgttctgcctctgcaatcgctaaaagtcgaggatcacgcaagtccaagggtgagc |
17866307 |
T |
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| Q |
221 |
cagatgatgtcca |
233 |
Q |
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||||| ||||||| |
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| T |
17866308 |
cagataatgtcca |
17866320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 79 - 224
Target Start/End: Complemental strand, 24088506 - 24088361
Alignment:
| Q |
79 |
cttacaattagagcagctgagcggcaaaatgcagctccactagcattagaagcagcatactcatcatattcagcatccaggaattgacgttctgcctctg |
178 |
Q |
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|||||||| ||||||||||| |||||||||||||||||| | || |||||||||||||| ||||||||||||| || | |||||||||||||||||||| |
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| T |
24088506 |
cttacaatgagagcagctgaacggcaaaatgcagctccattggcgttagaagcagcatatccatcatattcagcttcgaagaattgacgttctgcctctg |
24088407 |
T |
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| Q |
179 |
caatcgccaaaagtcgaggatcacgcaagtccaagggtgagccaga |
224 |
Q |
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| T |
24088406 |
caattgccaacagtcgaggatcacgcaagtccaaaggtgtgccaga |
24088361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 18396667 - 18396725
Alignment:
| Q |
83 |
caattagagcagctgagcggcaaaatgcagctccactagcattagaagcagcatactca |
141 |
Q |
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||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||| |
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| T |
18396667 |
caattagagcagctgagaggcaaaatgcagctctattagcattataagcagcatactca |
18396725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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