View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0840_low_45 (Length: 221)
Name: NF0840_low_45
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 27186014 - 27185856
Alignment:
| Q |
1 |
taatcctaaaaagagaagtatacaaggtaattaagatgacagtttaacttccaaataataatagaa-----------gtaattaatagaacatcaccaaa |
89 |
Q |
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| T |
27186014 |
taatcctaaaaagagaagtatacaaggtaattaagatgacagtttaacttccaaataataatagaatgataatggaagtaattaatagaacatcaccaaa |
27185915 |
T |
|
| Q |
90 |
taattccatctataagtcttaatctattaaacatgtgttaattgtgatttgcagtataa |
148 |
Q |
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| T |
27185914 |
taattccatctataagtcttaatctattaaacatgtgttaattgtgatttgcagtataa |
27185856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 27229433 - 27229503
Alignment:
| Q |
78 |
aacatcaccaaataattccatctataagtcttaatctattaaacatgtgttaattgtgatttgcagtataa |
148 |
Q |
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||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
27229433 |
aacatcaccaaataattccatgtatcagtcttaatctattgaacatgtgttaattgtgatttgcaggataa |
27229503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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