View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0840_low_5 (Length: 589)
Name: NF0840_low_5
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 120 - 584
Target Start/End: Complemental strand, 39583154 - 39582690
Alignment:
| Q |
120 |
tttcttgcactcatatcatatgcaaatatactattgacgtgcgtctgtagttgaaaatttgaacataacagatctgaactgactgataatgagaatgaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39583154 |
tttcttgcactcatatcatatgcaaatatactattgacgtgcgtctgtagttgaaaatttgaacataacagatctgaactgactgataatgagaatgaat |
39583055 |
T |
|
| Q |
220 |
agaatattgatgcaaattttaataatgtggcagtctactaatttaagttttaaattagctgaaatagtacatcaataaataactcaataagcgtaccttt |
319 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39583054 |
agaatattgatgcaaattttaatattgtggcagtctactaatttaagttttaaattagctgaaatagtacatcaataaataactcaataagcgtaccttt |
39582955 |
T |
|
| Q |
320 |
tgaaagttttaaacaaacnnnnnnnnnnnctcacgttttacgcacaccatatataactatataagcatgtttaagaagcacaatcttctagttcagattt |
419 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39582954 |
tgaaagttttaaacaaacaaaaaaaaaaactcacgttttacgcacaccatatataactatataagcatgtttaagaagcacaatcttctagttcagattt |
39582855 |
T |
|
| Q |
420 |
tcgttttttgtacaagatatcatataaatgttccaagaaacttcatatatagttcatatttcatggtacccagctgcttgattcgtcgagactgttctgt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39582854 |
tcgttttttgtacaagatatcatataaatgttccaagaaacttcatatatagttcatatttcatggtacccagctgcttgattcgtcgagactgttctgt |
39582755 |
T |
|
| Q |
520 |
tactaaataaaaattctcatctctccctccctctctcaagtgtcttctgttttgttcttttctgt |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39582754 |
tactaaataaaaattctcatctctccctccctctctcaagtgtcttccgttttgttcttttctgt |
39582690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 39583268 - 39583178
Alignment:
| Q |
1 |
atgataacatgtgcttttgaattggagacagagagaaggactnnnnnnnnnnntgttctatgtgtgaaacaaaaaaaagt-taaatataaa |
90 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39583268 |
atgataacatgtgcttttgcattggaggcagagagaaggactaaaacaaaacatgttctatgtgtgaaacaaaaaaaagtgtaaatataaa |
39583178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 39618359 - 39618427
Alignment:
| Q |
163 |
tctgtagttgaaaatttgaacataacagatctgaactgactgataatgagaatgaatagaatattgatg |
231 |
Q |
| |
|
||||||| |||||||||||||||||| ||| |||| | |||||||||||||| || ||||||||||| |
|
|
| T |
39618359 |
tctgtagatgaaaatttgaacataactgattggaacagcgtgataatgagaatgcatggaatattgatg |
39618427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 116 times since January 2019
Visitors: 6125