View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0840_low_6 (Length: 582)
Name: NF0840_low_6
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 30 - 571
Target Start/End: Complemental strand, 22139310 - 22138769
Alignment:
| Q |
30 |
gatttaaccacggttactatctaccccttcacttagcaatactgaaaggcgactgggaatctacaaaggcttttcttgataacgatccaagtgcattgac |
129 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22139310 |
gatttaaccacagttactatctaccccttcacttagcaatactgaaaggcgactgggaatctacaaaggcttttcttgataacgatccaagtgcattgac |
22139211 |
T |
|
| Q |
130 |
agcgaaggttacggtacatggcaggaccgcactccatgttgcagcagtaggagctcaatggaatcttgttgagaagttggtggagcatatgcctgcaaat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22139210 |
agcgaaggttacggtacatggcaggaccgcactccatgttgcagcagtaggagctcaatggaatcttgttgagaagttggtggagcatatgcctgcaaat |
22139111 |
T |
|
| Q |
230 |
atgctaacagaattggattttatgggttgtagttgccttcactatgttgcaatgggcaaaagtgtaaatgctgcgaaagcattagtggctaaaaatcctt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22139110 |
atgctaacagaattggattttatgggttgtagttgcctccactatgttgcaatgggcgaaagtgtaaatgctgcgaaagcattagtggctaaaaatcctt |
22139011 |
T |
|
| Q |
330 |
ctcttacacaagttactgattctaaaggatttacaccactcatctatagtcttacttctacaagacacagacacatggttaggtatcttttaatgaatac |
429 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22139010 |
ctcttacacaagttactgattttaaaggatttacaccactcatctatagtcttacttctacaagacacagacacatggttaggtatcttttaatgaatac |
22138911 |
T |
|
| Q |
430 |
gacagatgagagacctgggtgtccattttctggtccttctgctagtcaacttgttgctttgctcactgcctctggatttcacggtaattaaaattatttt |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22138910 |
gacagatgagagacctgggtgtccattttctggtccttctgctagtcaacttgttgctttgctcactgcctctggatttcacggtaattaaaattatttt |
22138811 |
T |
|
| Q |
530 |
ctgaatgtgtaaatactgcaactcttttcagtcctgattcat |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22138810 |
ctgaatgtgtaaatactgcaactcttttcagtcctgattcat |
22138769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 30 - 571
Target Start/End: Complemental strand, 21987830 - 21987289
Alignment:
| Q |
30 |
gatttaaccacggttactatctaccccttcacttagcaatactgaaaggcgactgggaatctacaaaggcttttcttgataacgatccaagtgcattgac |
129 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21987830 |
gatttaaccacagttactatctaccccttcacttagcaatactgaaaggcgactgggaatctacaaaggcttttcttgataacgatccaagtgcattgac |
21987731 |
T |
|
| Q |
130 |
agcgaaggttacggtacatggcaggaccgcactccatgttgcagcagtaggagctcaatggaatcttgttgagaagttggtggagcatatgcctgcaaat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21987730 |
agcgaaggttacggtacatggcaggaccgcactccatgtagcagcagtaggagctcaatggaatcttgttgagaagttggtggagtatatgcctgcaaat |
21987631 |
T |
|
| Q |
230 |
atgctaacagaattggattttatgggttgtagttgccttcactatgttgcaatgggcaaaagtgtaaatgctgcgaaagcattagtggctaaaaatcctt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21987630 |
atgctaacagaattggattttatgggttgtacttgccttcactatgttgcaatgggcgaaagtgtaaatgctgtgaaagcattagtggctaaaaatcctt |
21987531 |
T |
|
| Q |
330 |
ctcttacacaagttactgattctaaaggatttacaccactcatctatagtcttacttctacaagacacagacacatggttaggtatcttttaatgaatac |
429 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21987530 |
ctgttacacaagttactgattttaaaggatttacaccactcatctatagtcttacttctacaagacacagaaacatggttaggtatcttttaatgaatac |
21987431 |
T |
|
| Q |
430 |
gacagatgagagacctgggtgtccattttctggtccttctgctagtcaacttgttgctttgctcactgcctctggatttcacggtaattaaaattatttt |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21987430 |
gacagatgagagacctgggtgtccattttctggtccttctgctagtcaacttgttgctttgctcactgcctctggatttcacggtaattaaaattattta |
21987331 |
T |
|
| Q |
530 |
ctgaatgtgtaaatactgcaactcttttcagtcctgattcat |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21987330 |
ctgaatgtgtaaatactgcaactcttttcagtcctgattcat |
21987289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 30 - 571
Target Start/End: Complemental strand, 21965394 - 21964853
Alignment:
| Q |
30 |
gatttaaccacggttactatctaccccttcacttagcaatactgaaaggcgactgggaatctacaaaggcttttcttgataacgatccaagtgcattgac |
129 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
21965394 |
gatttaaccacagttactatctaccccttcacttagcaatactgaaaggcgactgggaatctacagaggcttttcttgataacgatccaagggcattgac |
21965295 |
T |
|
| Q |
130 |
agcgaaggttacggtacatggcaggaccgcactccatgttgcagcagtaggagctcaatggaatcttgttgagaagttggtggagcatatgcctgcaaat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21965294 |
agcgaaggttacggtacatggcaggaccgcactccatgtagcagcagtaggagctcaatggaatcttgttgagaagttggtggagtatatgcctgcaaat |
21965195 |
T |
|
| Q |
230 |
atgctaacagaattggattttatgggttgtagttgccttcactatgttgcaatgggcaaaagtgtaaatgctgcgaaagcattagtggctaaaaatcctt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21965194 |
atgctaacagaattggattttatgggttgtacttgccttcactatgttgcaatgggcgaaagtgtaaatgctgtgaaagcattagtggctaaaaatcctt |
21965095 |
T |
|
| Q |
330 |
ctcttacacaagttactgattctaaaggatttacaccactcatctatagtcttacttctacaagacacagacacatggttaggtatcttttaatgaatac |
429 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
21965094 |
ctgttacacaagttactgattttaaaggatttacaccactcatctatagtcttacttctacaagacacagagacatggtttggtatcttttaatgaatac |
21964995 |
T |
|
| Q |
430 |
gacagatgagagacctgggtgtccattttctggtccttctgctagtcaacttgttgctttgctcactgcctctggatttcacggtaattaaaattatttt |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21964994 |
gacagatgagagacctgggtgtccattttctggtccttctgctagtcaacttgttgctttgctcactgcctctggatttcacggtaattaaaattattta |
21964895 |
T |
|
| Q |
530 |
ctgaatgtgtaaatactgcaactcttttcagtcctgattcat |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21964894 |
ctgaatgtgtaaatactgcaactcttttcagtcctgattcat |
21964853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 30 - 571
Target Start/End: Original strand, 18941191 - 18941732
Alignment:
| Q |
30 |
gatttaaccacggttactatctaccccttcacttagcaatactgaaaggcgactgggaatctacaaaggcttttcttgataacgatccaagtgcattgac |
129 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
18941191 |
gatttaaccacagttactatctaccccttcacttagcaatactgaaaggcgactggaaatctacaagagctttccttgataacgatccaagtgcattgac |
18941290 |
T |
|
| Q |
130 |
agcgaaggttacggtacatggcaggaccgcactccatgttgcagcagtaggagctcaatggaatcttgttgagaagttggtggagcatatgcctgcaaat |
229 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||| ||||| |||||||||||| |||||||||| |||||||||||||| || || |||||||| ||||| |
|
|
| T |
18941291 |
agcgaaggttacggtaaatggaaggacagcactacatgtagcagcagtaggaactcaatggaaaattgttgagaagttgatgaagaatatgcctacaaat |
18941390 |
T |
|
| Q |
230 |
atgctaacagaattggattttatgggttgtagttgccttcactatgttgcaatgggcaaaagtgtaaatgctgcgaaagcattagtggctaaaaatcctt |
329 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||| ||||||| || ||| |||||||||||||||| ||| |
|
|
| T |
18941391 |
atactaacagaattggattttatgggttgtacttgccttcactatgttgcaatgagcgaaaaagtaaatgatgaaaaaaaattagtggctaaaaatactt |
18941490 |
T |
|
| Q |
330 |
ctcttacacaagttactgattctaaaggatttacaccactcatctatagtcttacttctacaagacacagacacatggttaggtatcttttaatgaatac |
429 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| |
|
|
| T |
18941491 |
ctgttacacaagttactgattttaaaggatttacaccactcatctatagtcttacttctacaagacacagggacatggtttggtatcttttaacgaatac |
18941590 |
T |
|
| Q |
430 |
gacagatgagagacctgggtgtccattttctggtccttctgctagtcaacttgttgctttgctcactgcctctggatttcacggtaattaaaattatttt |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18941591 |
gacagatgagagacctgggtgtccattttctggtccttctgctagtcaacttgttgctttgctcactgcctctggatttcacggtaattaaaattatttg |
18941690 |
T |
|
| Q |
530 |
ctgaatgtgtaaatactgcaactcttttcagtcctgattcat |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18941691 |
ctgaatgtgtaaatactgcaactcttttcagtcctgattcat |
18941732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 268 - 492
Target Start/End: Complemental strand, 21745523 - 21745299
Alignment:
| Q |
268 |
tcactatgttgcaatgggcaaaagtgtaaatgctgcgaaagcattagtggctaaaaatccttctcttacacaagttactgattctaaaggatttacacca |
367 |
Q |
| |
|
||||||||||||||||||| |||| || || ||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
21745523 |
tcactatgttgcaatgggcgaaagcgttaaggctgcaaaagcattggtggctaaaaatccttctcttacacaagttactgattttaaaggattcacacca |
21745424 |
T |
|
| Q |
368 |
ctcatctatagtcttacttctacaagacacagacacatggttaggtatcttttaatgaatacgacagatgagagacctgggtgtccattttctggtcctt |
467 |
Q |
| |
|
|||||||||||| | |||||||||||| | | |||||||| | |||||||| |||||||| |||||||| ||||||| | ||||| |||||| | | |
|
|
| T |
21745423 |
ctcatctatagtgtcacttctacaagatgtaaagacatggttcgatatctttttatgaatactacagatgatggacctggcagaccattctctggttcct |
21745324 |
T |
|
| Q |
468 |
ctgctagtcaacttgttgctttgct |
492 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
21745323 |
ctgctagtcaacttgttgctttgct |
21745299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 30 - 521
Target Start/End: Original strand, 39749491 - 39749982
Alignment:
| Q |
30 |
gatttaaccacggttactatctaccccttcacttagcaatactgaaaggcgactgggaatctacaaaggcttttcttgataacgatccaagtgcattgac |
129 |
Q |
| |
|
||||||||||| ||||||| | |||||| |||||||||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
39749491 |
gatttaaccacagttactaccaacccctgcacttagcaatactaaatggcgattgggaatccacaaaggctttccttgataacgatccaagcacattgac |
39749590 |
T |
|
| Q |
130 |
agcgaaggttacggtacatggcaggaccgcactccatgttgcagcagtaggagctcaatggaatcttgttgagaagttggtggagcatatgcctgcaaat |
229 |
Q |
| |
|
||||||| |||| ||| ||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||| | |||||||||||||| |
|
|
| T |
39749591 |
agcgaagattacaatacttggtaggactgcacttcatgttgcagcggtaggagctcaatggaaacttgttgagaaattggtgcaatatatgcctgcaaat |
39749690 |
T |
|
| Q |
230 |
atgctaacagaattggattttatgggttgtagttgccttcactatgttgcaatgggcaaaagtgtaaatgctgcgaaagcattagtggctaaaaatcctt |
329 |
Q |
| |
|
|||||| | ||||||||||| |||||||||| |||||||||||||||||| |||||| |||||||| || |||| || | || | ||| ||| |||||| |
|
|
| T |
39749691 |
atgctatcggaattggatttgatgggttgtacttgccttcactatgttgctatgggcgaaagtgtagattctgctaagacgttggcggcaaaatatcctt |
39749790 |
T |
|
| Q |
330 |
ctcttacacaagttactgattctaaaggatttacaccactcatctatagtcttacttctacaagacacagacacatggttaggtatcttttaatgaatac |
429 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| |||||||||||||||||| |||| ||||||||| | |||||||| |||||||| | ||| ||| |
|
|
| T |
39749791 |
ctcttacacaagtaactgattttaaaggattcacaccactcatctatagtattacctctacaagatgtaaggacatggtttggtatcttgttttgagtac |
39749890 |
T |
|
| Q |
430 |
gacagatgagagacctgggtgtccattttctggtccttctgctagtcaacttgttgctttgctcactgcctctggatttcacggtaattaaa |
521 |
Q |
| |
|
|| |||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| |||||| | |||||||| |||||||||| |
|
|
| T |
39749891 |
tactgatgagagacctggctgtccattctctggtccctcagctagtcaacttgttgctttgcttactgccgccggatttcatggtaattaaa |
39749982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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