View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0840_low_7 (Length: 550)
Name: NF0840_low_7
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0840_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 30 - 540
Target Start/End: Complemental strand, 43262909 - 43262399
Alignment:
| Q |
30 |
gatactgcaaacaacgaagaaatctagaaacttctctggcctctacctttttccacgttcagtaatgaacttgagagcgaaacttgagaattgagcaagg |
129 |
Q |
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| T |
43262909 |
gatactgctaacaacgaagaaatctagaaacttctctggcctctacctttttccacgttcagtaatgaacttgagagcgaaacttgagaattgagcaagg |
43262810 |
T |
|
| Q |
130 |
gnnnnnnncatcttcaacatagaacgacccttaataattccctctctcgcgcctcttgcggttcttgccgccgcaagtgcacccgagtcaggctcagttt |
229 |
Q |
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| T |
43262809 |
gagaaaaacatcttcaacatagaacgacccttaataattccctctctcgcgcctcttgcggttcttgccgccgcaagtgcacccgagtcaggctcagttt |
43262710 |
T |
|
| Q |
230 |
tgggacgttgttcgattccctgcaatgaagctaaatataaccaaatgaacaacattttttgacaccatagttctaaattgcattctacagtcgcaattac |
329 |
Q |
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| T |
43262709 |
tgggacgttgttcgattccctgcaatgaagctaaatataaccaaatgaacaacattttttgacaccatagttctaaattgcattctacagtcgcaattac |
43262610 |
T |
|
| Q |
330 |
ggcaacattataatagtgttataggtcatcacatttgcaaccgcaattggcaattgtagctgcatcagctgcatttactaatattttaccagtgtaatcg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43262609 |
ggcaacattataatagtgttataggtcatcacatttgcaaccgcaattggcaattgtagctgcatcagctgcatttactaatattttaccagtgtaatcg |
43262510 |
T |
|
| Q |
430 |
tagcaatttaaaatcattttgacacatctacaaactcaaattatagaaacctaacacctatatgttgcaaggctgacacatatggttccttcacattaac |
529 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43262509 |
tagcaatttaaaatcacttcgacacatctacaaactcaaattatagaaacctaacacctatatgttgcaaggctgacacatgtggttccttcacattaac |
43262410 |
T |
|
| Q |
530 |
gggttgtctgt |
540 |
Q |
| |
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||||||||||| |
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| T |
43262409 |
gggttgtctgt |
43262399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 328
Target Start/End: Complemental strand, 2620635 - 2620600
Alignment:
| Q |
293 |
accatagttctaaattgcattctacagtcgcaatta |
328 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
2620635 |
accatagttctaaattgcactctacagtcgcaatta |
2620600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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