View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0840_low_9 (Length: 486)

Name: NF0840_low_9
Description: NF0840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0840_low_9
NF0840_low_9
[»] chr1 (1 HSPs)
chr1 (58-432)||(6257000-6257386)
[»] chr7 (2 HSPs)
chr7 (424-480)||(35029510-35029567)
chr7 (58-94)||(32962886-32962922)
[»] chr8 (3 HSPs)
chr8 (53-103)||(44254294-44254344)
chr8 (60-110)||(13654816-13654866)
chr8 (60-110)||(13713458-13713508)
[»] chr4 (1 HSPs)
chr4 (47-109)||(23226681-23226743)
[»] scaffold0118 (1 HSPs)
scaffold0118 (47-92)||(37304-37349)
[»] chr6 (1 HSPs)
chr6 (58-105)||(34675793-34675840)
[»] chr2 (2 HSPs)
chr2 (47-90)||(37065410-37065453)
chr2 (48-104)||(30737043-30737099)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 58 - 432
Target Start/End: Original strand, 6257000 - 6257386
Alignment:
Q  58 tagtggctaaaattcacattttttaaagtgaataaataggatgtccggtgtttaaattctaatccctgcatataat------------gctaaaagaaaa 145  Q
    ||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||            ||||||||||||    
T  6257000 tagtggctagaattcacattttttaaagtggataaataggatatccggtgtttaaactctaatccctgcatataataatgcatgtcttgctaaaagaaaa 6257099  T
Q  146 tactaattggaatcatatgctattcagtttttgtggcttctttcagctaaaatcataaaatccggcaaagattgaagtaatgatgatatttcaagtgcag 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6257100 tactaattggaatcatatgctattcagtttttgtggcttctttcagctaaaatcataaaatccggcaaagattgaagtaatgatgatatttcaagtgcag 6257199  T
Q  246 acaaagaccaatactaaggtcaagatgaaggtgcaccatatacatactttacttattgacccgacacctctgccagctaacttagtgaagtatcattctc 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6257200 acaaagaccaatactaaggtcaagatgaaggtgcaccatatacatactttacttattgacccgacacctctgccagctaacttagtgaagtatcattctc 6257299  T
Q  346 aactcttgtttggatttagtgaaaatggagaatgagatggaatggaagaaaatatctccactttctctggacttattctggtaattg 432  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  6257300 aactcttgtttggattcagtgaaaatggagaatgagatggaatggaagaaaatatctccactttctctggacttattcaggtgattg 6257386  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 480
Target Start/End: Complemental strand, 35029567 - 35029510
Alignment:
Q  424 tggtaattgggcaacttactttacgga--gtgttgtatcatcattgtacatagtatatt 480  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  35029567 tggtaattgggcaacttactttacggagtgtgttgt-tcatcattgtacatagtatatt 35029510  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 32962886 - 32962922
Alignment:
Q  58 tagtggctaaaattcacattttttaaagtgaataaat 94  Q
    ||||||||||||||||||||||| || ||||||||||    
T  32962886 tagtggctaaaattcacatttttcaaggtgaataaat 32962922  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 44254294 - 44254344
Alignment:
Q  53 tagcatagtggctaaaattcacattttttaaagtgaataaataggatgtcc 103  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  44254294 tagcatagtggctaaaattcacatttttcaaggtgaataagtaggatgtcc 44254344  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 13654816 - 13654866
Alignment:
Q  60 gtggctaaaattcacattttttaaagtgaataaataggatgtccggtgttt 110  Q
    |||| |||||||||||||||||||||||||||| | || ||||||| ||||    
T  13654816 gtggttaaaattcacattttttaaagtgaataagtggggtgtccggagttt 13654866  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 13713458 - 13713508
Alignment:
Q  60 gtggctaaaattcacattttttaaagtgaataaataggatgtccggtgttt 110  Q
    |||| |||||||||||||||||||||||||||| | || ||||||| ||||    
T  13713458 gtggttaaaattcacattttttaaagtgaataagtggggtgtccggagttt 13713508  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 23226681 - 23226743
Alignment:
Q  47 gtcaaatagcatagtggctaaaattcacattttttaaagtgaataaataggatgtccggtgtt 109  Q
    ||||| ||| |||||||||| |||||||||||||||| |||||||| |  |||||||||||||    
T  23226681 gtcaagtagtatagtggctataattcacattttttaaggtgaataagtgagatgtccggtgtt 23226743  T

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Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 37304 - 37349
Alignment:
Q  47 gtcaaatagcatagtggctaaaattcacattttttaaagtgaataa 92  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||||    
T  37304 gtcaaatagcctagtggctaaatttcacattttttaaggtgaataa 37349  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 34675793 - 34675840
Alignment:
Q  58 tagtggctaaaattcacattttttaaagtgaataaataggatgtccgg 105  Q
    ||||||||| ||||||||||||||||||||||||| | || |||||||    
T  34675793 tagtggctagaattcacattttttaaagtgaataactggggtgtccgg 34675840  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 37065410 - 37065453
Alignment:
Q  47 gtcaaatagcatagtggctaaaattcacattttttaaagtgaat 90  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||    
T  37065410 gtcaaatagcataatggttaaaattcacattttttaaggtgaat 37065453  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 30737099 - 30737043
Alignment:
Q  48 tcaaatagcatagtggctaaaattcacattttttaaagtgaataaataggatgtccg 104  Q
    |||| |||| ||||| ||| |||||||||||||||| |||||||| | |||||||||    
T  30737099 tcaagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 30737043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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