View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841-Insertion-1 (Length: 881)
Name: NF0841-Insertion-1
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 6 - 492
Target Start/End: Original strand, 46685465 - 46685951
Alignment:
| Q |
6 |
caacaagctcagaaggaatgatggaaataagatcaagtacaaaccaagtttttgcatatttccaagcaatccgtttcgggttatctacgaacaaataggt |
105 |
Q |
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| T |
46685465 |
caacaagctcagaaggaatgatggaaataagatcaagtacaaaccaagtttttgcatatttccaagcaatctgtttcgggttatctacgaacaaataggt |
46685564 |
T |
|
| Q |
106 |
agttttgtctatataagccacaaagaaggtgacaactatatctatagcaaagaatccattgacaatattatcactaacagaaaggggtttttgtggtttc |
205 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46685565 |
agttttgtctatataagccacaaagaaagtgagaactatatctatagcaaagaatccattgacaatattatcagtaacagaaaggggtttttgtggtttc |
46685664 |
T |
|
| Q |
206 |
ttaaggaatccaaattcaaatggagatacccatgcagtataaacaaccaatgtaacaaggaaagtttcccatatcctgcaaaagccaaaaagttttaatt |
305 |
Q |
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| T |
46685665 |
ttaaggaatccaaattcaaatggagatacccatgcagtatacacaaccaatgtaacaaggaaagtttcccatatcctgcaaaagccaaaaagttttaatt |
46685764 |
T |
|
| Q |
306 |
acttatcggtcttagaaaactctaaatttcaaatgcagcagttatttatgttcaataagatgagaagtagggatgtcaatgagacgggtgttggcgggag |
405 |
Q |
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| T |
46685765 |
acttaatagtcttagaaaactctaaatttcaaatgcagcagttatttatgttcaataagatgagaagtagggatgtcaatgagacgggtgctggcgggag |
46685864 |
T |
|
| Q |
406 |
tactcccaccatccaacatgctcatcaactccattccccgccttggggagtattctcctcctaaatctctgtctccgccccatgatc |
492 |
Q |
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| T |
46685865 |
tactcccgccatccaaaatgctcatcaactccattccccgccttggggagtattctcctcctaaatctccgtctccgccccatgatc |
46685951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 582 - 796
Target Start/End: Original strand, 46686041 - 46686255
Alignment:
| Q |
582 |
gacattattgcgagttttgcgacaacaataaatatctccccacaccacctagtgggactttctcccccatcccatttgtgtgggggaaaacatcccgcca |
681 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
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| T |
46686041 |
gacattattgcgagttttgcgacaacaataaatattttcccaaatcacctagtgggactttctcccccatccaattcgtgtgggggaaaacttcccgcca |
46686140 |
T |
|
| Q |
682 |
acgagaccccaaatggggtcccccgctgttgggacggggagttttaaaaaactttgctaattgattacgttgaattagaagcaatcata-aagtgaattt |
780 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
46686141 |
gcgagaccccaaatgggg-cccccgctgttgggacggggagttttaaaaaactttgctaattgattacgttgaattaaaagcaatcatacaagtgaattt |
46686239 |
T |
|
| Q |
781 |
aaaaagagaaatgata |
796 |
Q |
| |
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|||||||||||||||| |
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| T |
46686240 |
aaaaagagaaatgata |
46686255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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