View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841-Insertion-4 (Length: 436)
Name: NF0841-Insertion-4
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Original strand, 1701991 - 1702419
Alignment:
| Q |
8 |
gaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatcttaactctcatggtatatctcacg |
107 |
Q |
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| T |
1701991 |
gaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatcttaactctcatggtatatctcact |
1702090 |
T |
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| Q |
108 |
atatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgt |
207 |
Q |
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| T |
1702091 |
atatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgt |
1702190 |
T |
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| Q |
208 |
tccacaaaaattctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgacaacaacacatcttaaaaacaaatgtcctaatgaaattctg |
307 |
Q |
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| T |
1702191 |
tccacaaaaattctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgccaacaacacatcttaaaaacaaatgtcctcatgaaattctg |
1702290 |
T |
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| Q |
308 |
tttggttccactcctaattatcttaatcttggagtctttggatatctgtgctacccatggcttcgaccatactctcaaaataagttatccaatcgaagca |
407 |
Q |
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| T |
1702291 |
tttggttccactcctaattatcttaatcttcgagtctttggatgtctgtgctacccatggcttcgaccatactctcaaaataagttatccaatcgaagca |
1702390 |
T |
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| Q |
408 |
tgccatgtgttttctttggctattctaca |
436 |
Q |
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| T |
1702391 |
tgccatgtgttttctttggctactctaca |
1702419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 5400743 - 5400962
Alignment:
| Q |
24 |
acaaagttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgta |
123 |
Q |
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| T |
5400743 |
acaaagtcaaatctatttacactgatggtggaactgaatactttaaactcaagccatatttcaatacacatggaatatcccattacattagcccacctta |
5400842 |
T |
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| Q |
124 |
cactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctgg |
223 |
Q |
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| T |
5400843 |
tactcctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctgg |
5400942 |
T |
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| Q |
224 |
tgttatgccttccaaatggc |
243 |
Q |
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| T |
5400943 |
tgttatgcttttcaaatggc |
5400962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 3541718 - 3541937
Alignment:
| Q |
24 |
acaaagttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgta |
123 |
Q |
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| T |
3541718 |
acaaagtcaaatctatttacactgatggtggaactgaatactttaaactcaagccatatttcaatacacatggaatatcccattacattagcccacctta |
3541817 |
T |
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| Q |
124 |
cactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctgg |
223 |
Q |
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| T |
3541818 |
tactcctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctgg |
3541917 |
T |
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| Q |
224 |
tgttatgccttccaaatggc |
243 |
Q |
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| T |
3541918 |
tgttatgcttttcaaatggc |
3541937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 26592339 - 26592278
Alignment:
| Q |
116 |
ccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaac |
177 |
Q |
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| T |
26592339 |
ccaccttacactcctgaacatattggcattgcagaacgcaaacattgccatatagtcgaaac |
26592278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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