View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841-Insertion-6 (Length: 235)
Name: NF0841-Insertion-6
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841-Insertion-6 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 340804 - 341031
Alignment:
| Q |
8 |
ggtttaccggcatgtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
340804 |
ggtttaccggcatgtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcg |
340903 |
T |
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| Q |
108 |
tgaaatgtttgaaccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagc |
207 |
Q |
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| T |
340904 |
tgaaatgtttgaaccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagc |
341003 |
T |
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| Q |
208 |
tttgaagcttttcaagagaagataattc |
235 |
Q |
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| T |
341004 |
tttgaagcttttcaagagaagataattc |
341031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 336766 - 336985
Alignment:
| Q |
8 |
ggtttaccggcatgtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcg |
107 |
Q |
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|||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| |||||| |
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| T |
336766 |
ggtttaccaacatgtatgctgtaatcacaaacgatccattgaatgttcactacatcatgagcaagaggtttgacaattttgagaaaggtgaaaggtttcg |
336865 |
T |
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| Q |
108 |
tgaaatgtttgaaccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagc |
207 |
Q |
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| T |
336866 |
tgaaacgttccaaccttttggtttaggaattttcactacagattcacatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagc |
336965 |
T |
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| Q |
208 |
tttgaagcttttcaagagaa |
227 |
Q |
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| T |
336966 |
tttgaagcttttcaagagaa |
336985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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