View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_high_1 (Length: 1261)

Name: NF0841_high_1
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_high_1
NF0841_high_1
[»] chr8 (11 HSPs)
chr8 (59-1032)||(41805146-41806116)
chr8 (464-984)||(41812017-41812535)
chr8 (462-987)||(41798798-41799321)
chr8 (1089-1203)||(41804727-41804841)
chr8 (209-355)||(41799488-41799633)
chr8 (1095-1201)||(41798336-41798442)
chr8 (1026-1088)||(41805049-41805111)
chr8 (112-209)||(41799727-41799824)
chr8 (1026-1088)||(41798656-41798718)
chr8 (29-59)||(38757365-38757395)
chr8 (1167-1200)||(41811628-41811661)
[»] chr5 (2 HSPs)
chr5 (88-158)||(278834-278904)
chr5 (29-59)||(30695621-30695651)
[»] chr3 (2 HSPs)
chr3 (29-60)||(21850543-21850574)
chr3 (29-59)||(21847453-21847483)


Alignment Details
Target: chr8 (Bit Score: 794; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 794; E-Value: 0
Query Start/End: Original strand, 59 - 1032
Target Start/End: Complemental strand, 41806116 - 41805146
Alignment:
Q  59 agagaatacacatcctggttctcagcatcagtagaggtcctgctactgatccccagagcctctatacaagaccaagtcctttatggaataagaagactta 158  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41806116 agagaatacacgtcctggttctcagcatcagtagaggtcctgctactgatccccagagcctctatacaagagcaagtcctttatggaataagaagactta 41806017  T
Q  159 attaatcaagttaactatcactgctagctagtttctagaaatatatgataaaatgtaaaataaaaagcatcaaagacgggtaagaactggaaaattttga 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41806016 attaatcaagttaactatcactgctagctagtttctagaaatatatgataaaatgtaaaataaaaagcatcaaagacgggtaagaactggaaaattttga 41805917  T
Q  259 tagtgggacatgttaacccaacgttctatactgaacaaaacaataagacgtcactaagattattcaattcaaattcaagagaagaacagaactaactttg 358  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41805916 tagtgggacatgttaacccagcgttctatactgaacaaaacaataagacgtcactaagattattcaattcaaattcaagagaagaacagaactaactttg 41805817  T
Q  359 ------atacagggnnnnnnntataactatacacatactcatgtttgtcaaatcacgacagtacctaattggacaaagttgcatnnnnnnnntatagatg 452  Q
          ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  41805816 ctactgatacagggaaaaaaatataactatacacatactcatgtttgtcaaatcacgacagtacctaattggacaaagttgcataaaaaaaatatagatg 41805717  T
Q  453 ggttcacattgctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctg 552  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41805716 ggttcacactgctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctg 41805617  T
Q  553 atggcctccctcttttcctctcccaagttcaacataccctcctctttctcttccatcaacttctctagctcttcaactcacttcttaagttcaacaacaa 652  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41805616 atggcctccctcttttcctctcccaagttcaacataccctcctctttctcttccatcaacttctctagctcttcaactctcttcttaagttcaacaacaa 41805517  T
Q  653 ttgttgtcacattcatcttctctga-ttccccctttcttgcctttgcctctagcttttcaaccttttccctcagagttaattcctcttcccttttaccct 751  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41805516 ttgttgtcacattcatcttctctgatttccccctttcttgcctttgcctctagcttttcaaccttttccctcagagttaattcctcttcccttttaccct 41805417  T
Q  752 gcagctcctccaacaaatggnnnnnnnatctgtctgtaactgcctcctttccttgttcatcttattgatatattcttttgtaacctgaagctcatgtgag 851  Q
    ||||||||||||||||||||       ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||        
T  41805416 gcagctcctccaacaaatgg-ttttttatctgtctgtaactgcctcttttccttgttcatcttattgatatattcttttgtaacctgaagctcatg---- 41805322  T
Q  852 atgtttgagatgcggttctcaatatttttgtggttgtcnnnnnnntttaagcttacagtatcgattccagatatcacactgttgaaccactctttagtac 951  Q
         |||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41805321 -----tgagatgcggttctcaatatttttgtggatgtcaaaaaaatttaagcttacagtatcgattccagatatcacactgttgaaccactctttagtac 41805227  T
Q  952 ttgtgatagtttcatgaaaagcttcattgtcagcggccattgtttcttctgcagtagaaatcctgatttgaagtgctctct 1032  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41805226 ttgtgatagtttcatgaaaagcttcattgtcagcggccattgttgcttctgcagtagaaatcctgatttgaagtgctctct 41805146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 464 - 984
Target Start/End: Complemental strand, 41812535 - 41812017
Alignment:
Q  464 ctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctgatggcctccct 563  Q
    ||||||||||||   |||||||||| |||| | |||| |||||| |||| | ||| | |||||||||||||  |||||| ||||||||||||||||||||    
T  41812535 ctctctggcccctttgagtctttgagatgattcccttgagatagacattacactcgcggtgataatcaatcaacaaacagagctgcctgatggcctccct 41812436  T
Q  564 cttttcctctcccaagttcaacataccctcctctttctcttccatcaacttctctagctcttcaactcacttcttaagttcaacaacaattgttgtcaca 663  Q
    ||||||||||||||| | ||| || || |||||||||||||  |||||||||| |||||||||||||  ||||||||||||| ||||| ||| |||||||    
T  41812435 cttttcctctcccaaatccaatattccttcctctttctcttttatcaacttctgtagctcttcaactgtcttcttaagttcatcaacagttgctgtcaca 41812336  T
Q  664 ttcatcttctctgattccccctttcttgcctttgcctctagcttttcaaccttttccctcagagttaattcctcttcccttttaccctgcagctcctcca 763  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| || |  ||||||| || |||||||| |||||||||||| ||||||||    
T  41812335 ttcatcttctctgattcctcctttcttgcctttgcctctagcttttcaacctctttctgcagagttgatccctcttcctttttaccctgcaactcctcca 41812236  T
Q  764 acaaatggnnnnnnnatctgtctgtaactgcctcctttccttgttcatcttattgatatattcttttgtaacctgaagctcatgtgagatgtttgagatg 863  Q
    | ||||||       ||||||||||||||||| | ||||| |  |||||| ||||| | ||||||||| |||||||||||| | ||||||||||||||||    
T  41812235 ataaatgg--tttttatctgtctgtaactgccccttttccctactcatctcattgacagattcttttgcaacctgaagctcgtatgagatgtttgagatg 41812138  T
Q  864 cggttctcaatatttttgtggttgtcnnnnnnntttaagcttacagtatcgattccagatatcacactgttgaaccactctttagtacttgtgatagttt 963  Q
    |||||||||  ||| |||  ||  ||       ||  |||||| |||||| || |||||||||| ||||||||  |||| |||| |||||||||||||||    
T  41812137 cggttctcataattattgcagtcatccgaaaatttagagcttatagtatctatcccagatatcatactgttgacacactttttaatacttgtgatagttt 41812038  T
Q  964 catgaaaagcttcattgtcag 984  Q
    |||||||||||||||||||||    
T  41812037 catgaaaagcttcattgtcag 41812017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 197; E-Value: 1e-106
Query Start/End: Original strand, 462 - 987
Target Start/End: Complemental strand, 41799321 - 41798798
Alignment:
Q  462 tgctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctgatggcctcc 561  Q
    |||||||||||||| ||| ||||||||||||| |||||| |||  |||| | | ||| | |||||||||||||| |||||| ||||||||||||||||||    
T  41799321 tgctctctggcccctgcgtgtctttgatatgatttccttgagacggtcactactctcacggtgataatcaatccacaaacagagctgcctgatggcctcc 41799222  T
Q  562 ctcttttcctctcccaagttcaacataccctcctctttctcttccatcaacttctctagctcttcaactcacttcttaagttcaacaacaattgttgtca 661  Q
    ||||||||||||||||| | ||| || || ||||||||||||| |||| |||||||||||||| |||||  ||||||||||||||||||| ||| |||||    
T  41799221 ctcttttcctctcccaaatccaatatgccttcctctttctctttcatcgacttctctagctctccaactgtcttcttaagttcaacaacagttgctgtca 41799122  T
Q  662 cattcatcttctctgattccccctttcttgcctttgcctctagcttttcaaccttttccctcagagttaattcctcttcccttttaccctgcagctcctc 761  Q
    |||||||||||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  41799121 cattcatcttctctgattcctcctttcttgccttcacctctagcttctcaaccttttccctcagagttaattccccttcctttttaccctgcagttcctc 41799022  T
Q  762 caacaaatggnnnnnnnatctgtctgtaactgcctcctttccttgttcatcttattgatatattcttttgtaacctgaagctcatgtgagatgtttgaga 861  Q
     ||||||          |||| |||||||||||| | |  || | ||||||||  ||| | ||||||||| ||||||||||||||| ||||||||||| |    
T  41799021 taacaaa--caatctttatctctctgtaactgccccttcaccctattcatcttgctgacagattcttttgcaacctgaagctcatgggagatgtttgata 41798924  T
Q  862 tgcggttctcaatatttttgtggttgtcnnnnnnntttaagcttacagtatcgattccagatatcacactgttgaaccactctttagtacttgtgatagt 961  Q
    ||  |||||||  |||||||   | |||       ||   ||| | |||||| || |||||||||||||||||||  ||| |||||  ||||||||||||    
T  41798923 tgtagttctcatgatttttgctttcgtcggaaaatttccggctcaaagtatctatcccagatatcacactgttgacacacactttaacacttgtgatagt 41798824  T
Q  962 ttcatgaaaagcttcattgtcagcgg 987  Q
    |||||||||||||||||||| |||||    
T  41798823 ttcatgaaaagcttcattgttagcgg 41798798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 9e-58
Query Start/End: Original strand, 1089 - 1203
Target Start/End: Complemental strand, 41804841 - 41804727
Alignment:
Q  1089 gttaacttgttcatattctttattcaaattctgatatgcatctgctcgttctgctaatgttctctgaagatccatgtttttgttggctaattcattcttt 1188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41804841 gttaacttgttcatattctttattcaaattctgatatgcatctgctcgttctgctaatgttctctgaagatccatgtttttgttggctaattcattcttt 41804742  T
Q  1189 tcattgtcaaccact 1203  Q
    |||||||||||||||    
T  41804741 tcattgtcaaccact 41804727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 209 - 355
Target Start/End: Complemental strand, 41799633 - 41799488
Alignment:
Q  209 aaatgtaaaataaaaagcatcaaagacgggtaagaactggaaaattttgatagtgggacatgttaacccaacgttctatactgaacaaaacaataagacg 308  Q
    ||||||||||||||| |||||||||||||||||||| ||| ||| ||| ||| ||||||||||| | ||||  || |||||||||||||||||||||||     
T  41799633 aaatgtaaaataaaa-gcatcaaagacgggtaagaattggcaaaatttaataatgggacatgttcatccaaatttgtatactgaacaaaacaataagacc 41799535  T
Q  309 tcactaagattattcaattcaaattcaagagaagaacagaactaact 355  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  41799534 tcactaagattattcaattcaaattcaagagaagaacaggactaact 41799488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 1095 - 1201
Target Start/End: Complemental strand, 41798442 - 41798336
Alignment:
Q  1095 ttgttcatattctttattcaaattctgatatgcatctgctcgttctgctaatgttctctgaagatccatgtttttgttggctaattcattcttttcattg 1194  Q
    ||||| |||||||| |||||| ||||||||||||||| || ||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41798442 ttgtttatattcttcattcaacttctgatatgcatcttcttgttcttccaatgttctctgaagatccatgtttttgtaggctaattcattcttttcattg 41798343  T
Q  1195 tcaacca 1201  Q
    |||||||    
T  41798342 tcaacca 41798336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 1026 - 1088
Target Start/End: Complemental strand, 41805111 - 41805049
Alignment:
Q  1026 gctctctcccttttcagttagcaattgttctttgtcccggatattttggtttgacaggcgaag 1088  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  41805111 gctctctcccttttcacttagcaattgttctttgtcccggatattttggtttgacaagcgaag 41805049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 41799824 - 41799727
Alignment:
Q  112 cagagcctctatacaagaccaagtcctttatggaataagaagacttaattaatcaagttaactatcactgctagctagtttctagaaatatatgataa 209  Q
    ||||| |||||| |||||  ||||||| |  |||||||||| |||||| |||||||||||||||||  ||| ||||||||||||  ||| ||||||||    
T  41799824 cagagtctctatgcaagagtaagtcctatgcggaataagaacacttaactaatcaagttaactatcgttgcaagctagtttctaataatctatgataa 41799727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1026 - 1088
Target Start/End: Complemental strand, 41798718 - 41798656
Alignment:
Q  1026 gctctctcccttttcagttagcaattgttctttgtcccggatattttggtttgacaggcgaag 1088  Q
    ||||||| |||||||| |||||||||||||| |  ||||||  ||||||||||||||||||||    
T  41798718 gctctcttccttttcacttagcaattgttctgtaacccggagcttttggtttgacaggcgaag 41798656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 38757365 - 38757395
Alignment:
Q  29 agcttccgcttctggtttttctgcgctatca 59  Q
    |||||||||||||||||||||||||||||||    
T  38757365 agcttccgcttctggtttttctgcgctatca 38757395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1167 - 1200
Target Start/End: Complemental strand, 41811661 - 41811628
Alignment:
Q  1167 tttgttggctaattcattcttttcattgtcaacc 1200  Q
    |||||||||||||||||| |||||||||||||||    
T  41811661 tttgttggctaattcattattttcattgtcaacc 41811628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 278834 - 278904
Alignment:
Q  88 agtagaggtcctgctactgatccccagagcctctatacaagaccaagtcctttatggaataagaagactta 158  Q
    ||||||||||||||||||||||| |||||||||||| |||||  ||||| ||| |||||||| || |||||    
T  278834 agtagaggtcctgctactgatccacagagcctctatgcaagagtaagtcttttgtggaataacaacactta 278904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 30695621 - 30695651
Alignment:
Q  29 agcttccgcttctggtttttctgcgctatca 59  Q
    |||||||||||||||||||||||||||||||    
T  30695621 agcttccgcttctggtttttctgcgctatca 30695651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 60
Target Start/End: Original strand, 21850543 - 21850574
Alignment:
Q  29 agcttccgcttctggtttttctgcgctatcag 60  Q
    ||||||||||||||||||||||||||||||||    
T  21850543 agcttccgcttctggtttttctgcgctatcag 21850574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 21847453 - 21847483
Alignment:
Q  29 agcttccgcttctggtttttctgcgctatca 59  Q
    |||||||||||||||||||||||||||||||    
T  21847453 agcttccgcttctggtttttctgcgctatca 21847483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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