View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0841_high_12 (Length: 577)
Name: NF0841_high_12
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_high_12 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 94 - 564
Target Start/End: Complemental strand, 38879118 - 38878648
Alignment:
| Q |
94 |
ttatgttcattggttctacagtaattaacaatagttagcaatcatgttgtgttactttcttattacagcttcaatttctgaaagaaaatttttactctgc |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
38879118 |
ttatgttcattggttctacagtaattaacaatagttagcaatcatgttgtgttactttcttattgcagcttcaatttctgaaagaaaatttttactctgc |
38879019 |
T |
|
| Q |
194 |
aatccagccaaattaccaaaatctttgtacagtgcttcaggttagtgaatttttcaatcaatttatgatcctagaaaactctgatttgcatattgtcctt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38879018 |
aatccagccaaattaccaaaatctttgtacagtgcttcaggttagtgaatttttcaatcaatttatgatcctagaaaactctgatttgcatattgtcctt |
38878919 |
T |
|
| Q |
294 |
cttgattttagtactaatttttcctattcatattaaacttcttcaggctgatccttctactcaagtcttaagctcaatagaattggaaacatatagatac |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38878918 |
cttgattttagtactaatttttcctattcatattaaacttcttcaggctgacccttctactcaagtcttaagctcaatagaattggaaacatatagatac |
38878819 |
T |
|
| Q |
394 |
cataagagtgaaatagaaaagattttgtcactctttgaactgagtaaaagccagatcactgctgatataaagaatcgtacaataaaagcacatcgttatt |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38878818 |
cataagagtgaaatagaaaagattttgtcactctttgaactgagtaaaagccagatcactgctgatataaagaatcgtacaataaaagcacatcgttatt |
38878719 |
T |
|
| Q |
494 |
tactaagccttccaaggacttccgagcagcccaacaaccaacagtcgcctcatgtgcaattaaagcaacag |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38878718 |
tactaagccttccaaggacttccgagcagcccaacaaccaacagtcgcctcatgtgcaattaaagcaacag |
38878648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 94 - 461
Target Start/End: Complemental strand, 16618596 - 16618242
Alignment:
| Q |
94 |
ttatgttcattggttctacagtaattaacaatagttagcaatcatgttgtgttactttcttattacagcttcaatttctgaaagaaaatttttactctgc |
193 |
Q |
| |
|
||||||||| || |||| || ||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |||| || ||||| | ||| || |
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|
| T |
16618596 |
ttatgttcaatgattctccaataattaacaatagttagtaat-atgttgtgttactttcttattgcagcttcaacttctaaaggaaaaatactaccctct |
16618498 |
T |
|
| Q |
194 |
aatccagccaaattaccaaaatctttgtacagtgcttcaggttagtgaatttttcaatcaatttatgatcctagaaaactctgatttgcatattgtcctt |
293 |
Q |
| |
|
|||| ||| | || |||| ||||| | || ||||||||| ||||||||||||| ||| ||||||| |||||||||||| |||| ||||| ||||| |
|
|
| T |
16618497 |
ggtccatgcaattcacaaaaagctttgcaaaggacttcaggtttgtgaatttttcaaacaaattatgattctagaaaactctcattttcatatcatcctt |
16618398 |
T |
|
| Q |
294 |
cttgattttagtactaatttttcctattcatattaaacttcttcaggctgatccttctactcaagtcttaagctcaatagaattggaaacatatagatac |
393 |
Q |
| |
|
||| |||||||||| || |||||||| ||||||||||||| |||| |||||||| |||| | | ||| ||| ||| || |||||| |
|
|
| T |
16618397 |
ctt------------aatttttcctgtttatattaaatttcttcaggctgaatcttcaactcaagttttaaacaaaggagatttgaaaaaatttagatat |
16618310 |
T |
|
| Q |
394 |
cataagagtgaaatagaaaagattttgtcactctttgaactgagtaaaagccagatcactgctgatat |
461 |
Q |
| |
|
|||| |||| ||||||| | |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16618309 |
catagaagtggaatagaagatcttttttcactctttgaactgagtaaaagccagatcactactgatat |
16618242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 228 - 470
Target Start/End: Complemental strand, 16639677 - 16639436
Alignment:
| Q |
228 |
cttcaggttagtgaatttttcaatcaatttatgatcctagaaaactctgatttgcatattgtccttcttgattttagtactaatttttcctattcatatt |
327 |
Q |
| |
|
||||||||| |||||||||| |||||| ||||||| |||||||||||| |||||||||| ||||||||| |||||| ||| ||||||||||||| || | |
|
|
| T |
16639677 |
cttcaggtttgtgaattttt-aatcaaattatgattctagaaaactctcatttgcatatcgtccttcttaattttactacaaatttttcctatttatgta |
16639579 |
T |
|
| Q |
328 |
aaacttcttcaggctgatccttctactcaagtcttaagctcaatagaattggaaacatatagataccataagagtgaaatagaaaagattttgtcactct |
427 |
Q |
| |
|
||| ||||||||| ||| || | |||| ||| |||| ||||| | || |||||| | |||| | ||||| || | ||||||| | ||||| |||||| |
|
|
| T |
16639578 |
aaatttcttcagggtgaatctccaactcgagttttaaactcaagacaagtggaaaattttagaaatcataaaagggcaatagaagacatttttccactct |
16639479 |
T |
|
| Q |
428 |
ttgaactgagtaaaagccagatcactgctgatataaagaatcg |
470 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| ||| |||| |
|
|
| T |
16639478 |
ttgaactgagtaaaagccagttcactaatgatatgaaggatcg |
16639436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 238 - 461
Target Start/End: Original strand, 16061494 - 16061717
Alignment:
| Q |
238 |
gtgaatttttcaatcaatttatgatcctagaaaactctgatttgcatatt-gtccttcttgattttagtactaatttttcctattcatattaaacttctt |
336 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||||||||||||||||||| || | ||| |||||| || |||||||||||||| | || | ||||| |
|
|
| T |
16061494 |
gtgaatttttcaatcaaattatgattccagaaaactctgatttgcatattagttttacttaattttactagtaatttttcctatttacatgacttttctt |
16061593 |
T |
|
| Q |
337 |
caggctgatccttctactcaagtcttaagctcaatagaattggaaacatatagataccataagagtgaaatagaaaagattttgtcactctttgaactga |
436 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||| ||||||| |||| ||||||||||| || ||||||| |||| |||| |||||||||||| ||| |
|
|
| T |
16061594 |
caggttgatccttctactcaagtttttagctcaagcaaattggatacatgtagataccataggaatgaaata-aaaatcttttttcactctttgaagtga |
16061692 |
T |
|
| Q |
437 |
gtaaaagccagatcactgctgatat |
461 |
Q |
| |
|
|| ||| ||| || |||||| |||| |
|
|
| T |
16061693 |
gttaaatccatattactgcttatat |
16061717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 269 - 413
Target Start/End: Complemental strand, 16067702 - 16067559
Alignment:
| Q |
269 |
aaactctgatttgcatattgtccttcttgattttagtactaatttttcctattcatattaaacttcttcaggctgatccttctactcaagtcttaagctc |
368 |
Q |
| |
|
||||||| ||||| ||||| || |||||||||||| |||||| |||||||||| |||||||| ||| ||||||||||| |||||||||||| |||||||| |
|
|
| T |
16067702 |
aaactcttatttgtatattctctttcttgattttactactaacttttcctatttatattaaatttcatcaggctgatcattctactcaagt-ttaagctc |
16067604 |
T |
|
| Q |
369 |
aatagaattggaaacatatagataccataagagtgaaatagaaaa |
413 |
Q |
| |
|
|| ||||||||| |||| |||||| |||| |||||||||||||| |
|
|
| T |
16067603 |
aagagaattggacacatgtagatatcatacaagtgaaatagaaaa |
16067559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 217 - 470
Target Start/End: Complemental strand, 16071140 - 16070890
Alignment:
| Q |
217 |
tttgtacagtgcttcaggttagtgaatttttc-aatcaatttatgatcctagaaaactctgatttgcatattgtccttcttgattttagtactaattttt |
315 |
Q |
| |
|
|||||| | ||||||||||| |||| ||||| |||||| |||||| |||| ||||||| || | |||||||| |||||||||||| ||||| |||| |
|
|
| T |
16071140 |
tttgtagaatgcttcaggtttatgaaattttcgaatcaaattatgaatctaggaaactcttgtt-gtatattgtctttcttgattttacaactaactttt |
16071042 |
T |
|
| Q |
316 |
cctattcatattaaacttcttcaggctgatccttctactcaagtcttaagctcaatagaattggaaacatatagataccataagagtgaaatagaaaaga |
415 |
Q |
| |
|
|||||| |||||||| ||| |||||||||| ||||||||||||| ||||||||| ||||||||| |||| ||||||||||| ||||||| | |||| |
|
|
| T |
16071041 |
cctatttatattaaatttcatcaggctgatacttctactcaagttttaagctcaggagaattggacacatgtagataccatacaagtgaaacataaaatc |
16070942 |
T |
|
| Q |
416 |
ttttgtcactctttgaactgagtaaaagccagatcactgctgatataaagaatcg |
470 |
Q |
| |
|
|||| | ||||| |||| || ||||||| |||| ||| ||||||||||| |||| |
|
|
| T |
16070941 |
tttt-tgactctatgaa--gaataaaagcaagattactactgatataaaggatcg |
16070890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 127 - 453
Target Start/End: Complemental strand, 16630897 - 16630571
Alignment:
| Q |
127 |
gttagcaatcatgttgtgttactttcttattacagcttcaatttctgaaagaaaatttttactctgcaatccagccaaattaccaaaatctttgtacagt |
226 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| ||||||||||||||||| |||| | ||| || |||| | | | | ||| |||| ||| | || |
|
|
| T |
16630897 |
gttagaaataatgttgtgttactttcttattgcagcttcaatttctgaagaaaaaatactaccctctaatcaatgcgattcaccgaaatagttgcagagg |
16630798 |
T |
|
| Q |
227 |
gcttcaggttagtgaatttttcaatcaatttatgatcctagaaaactctgatttgcatattgtccttcttgattttagt-actaatttttcctattcata |
325 |
Q |
| |
|
||||||||| |||||||||| |||||| ||||||| |||||||||||| |||||||||| ||||||||| |||||| | | |||| |||||||| || |
|
|
| T |
16630797 |
acttcaggtttgtgaattttt-aatcaaattatgattctagaaaactctcatttgcatatcgtccttcttaattttactaagaaattgttcctatttatg |
16630699 |
T |
|
| Q |
326 |
ttaaacttcttcaggctgatccttctactcaagtcttaagctcaatagaattggaaacatatagataccataagagtgaaatagaaaagattttgtcact |
425 |
Q |
| |
|
| ||| ||||||||| ||| || |||| ||| || | ||||| ||||||||||| | |||| | ||||| || | ||||||| | |||| |||| |
|
|
| T |
16630698 |
taaaatttcttcagggtgaatctcgaactcgagtttttaactcaagagaattggaaaattttagaaatcataaaagggcaatagaagacctttttccact |
16630599 |
T |
|
| Q |
426 |
ctttgaactgagtaaaagccagatcact |
453 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
16630598 |
ctttgaactgagtaaaagccagatcact |
16630571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 278 - 469
Target Start/End: Complemental strand, 16077367 - 16077176
Alignment:
| Q |
278 |
tttgcatattgtccttcttgattttagtactaatttttcctattcatattaaacttcttcaggctgatccttctactcaagtcttaagctcaatagaatt |
377 |
Q |
| |
|
|||| |||||||| |||| |||||| |||||| ||| |||||| |||||||| ||||| | | ||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
16077367 |
tttgtatattgtctctctttattttactactaactttacctatttatattaaatttctttaagttgatccttctagtcaagttttaagctcaagagaatt |
16077268 |
T |
|
| Q |
378 |
ggaaacatatagataccataagagtgaaatagaaaagattttgtcactctttgaactgagtaaaagccagatcactgctgatataaagaatc |
469 |
Q |
| |
|
|| |||| |||||||||| | |||| | |||| |||| || |||| |||||||||||||||| |||| ||| |||||||| |||||| |
|
|
| T |
16077267 |
gggcacatgtagataccattccggggaaacaaaaaatcttttttcgctctatgaactgagtaaaagcaagattactactgatatacagaatc |
16077176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 294 - 438
Target Start/End: Original strand, 16066827 - 16066970
Alignment:
| Q |
294 |
cttgattttagtactaatttttcctattcatattaaacttcttcaggctgatccttctactcaagtcttaagctcaatagaattggaaacatatagatac |
393 |
Q |
| |
|
|||||||||| || || ||||||||||| | || | ||||||||| |||||||||||||||||| |||||||||| ||||||| |||| ||||||| |
|
|
| T |
16066827 |
cttgattttactagtactttttcctatttacatgacttttcttcaggttgatccttctactcaagttttaagctcaagcaaattggatacatgtagatac |
16066926 |
T |
|
| Q |
394 |
cataagagtgaaatagaaaagattttgtcactctttgaactgagt |
438 |
Q |
| |
|
|||| || ||||||| |||| |||| |||||||||||| ||||| |
|
|
| T |
16066927 |
cataggaatgaaata-aaaatcttttttcactctttgaagtgagt |
16066970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 461
Target Start/End: Original strand, 16070260 - 16070385
Alignment:
| Q |
334 |
cttcaggctgatccttctactcaagtcttaagctcaatagaattggaaacatatagataccataagagtgaaatagaaaagattttgtcactctttgaac |
433 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||| ||||||| |||| ||||||||||| || |||||| |||| |||| |||||||||||| |
|
|
| T |
16070260 |
cttcaggttgatccttctactcaagtctttagctcaggcaaattggatacatgtagataccataggaatgaaat--aaaatcttttttcactctttgaag |
16070357 |
T |
|
| Q |
434 |
tgagtaaaagccagatcactgctgatat |
461 |
Q |
| |
|
||||||||| ||| || |||||| |||| |
|
|
| T |
16070358 |
tgagtaaaatccatattactgcttatat |
16070385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 16639778 - 16639730
Alignment:
| Q |
127 |
gttagcaatcatgttgtgttactttcttattacagcttcaatttctgaa |
175 |
Q |
| |
|
||||| ||| || |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16639778 |
gttagaaataatattgtgttactttcttattgcagcttcaatttctgaa |
16639730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 16076598 - 16076660
Alignment:
| Q |
241 |
aatttttcaatcaatttatgatcctagaaaactctgatttgcatattgtccttcttgatttta |
303 |
Q |
| |
|
||||||||||||| |||| || |||||||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
16076598 |
aatttttcaatcagattattattctagaaaactcttatttgtatattgtttttcttgatttta |
16076660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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