View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_high_15 (Length: 515)

Name: NF0841_high_15
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_high_15
NF0841_high_15
[»] chr4 (4 HSPs)
chr4 (29-260)||(51527554-51527794)
chr4 (315-352)||(29815096-29815133)
chr4 (315-352)||(48740567-48740604)
chr4 (316-352)||(40881216-40881252)
[»] chr3 (3 HSPs)
chr3 (315-351)||(48744307-48744343)
chr3 (315-352)||(33994704-33994741)
chr3 (315-351)||(32827327-32827363)
[»] chr1 (4 HSPs)
chr1 (315-351)||(7785298-7785334)
chr1 (315-351)||(26756024-26756060)
chr1 (315-352)||(48242614-48242651)
chr1 (315-343)||(5040599-5040627)
[»] scaffold0058 (1 HSPs)
scaffold0058 (315-352)||(14503-14540)
[»] chr8 (3 HSPs)
chr8 (315-352)||(9014750-9014787)
chr8 (315-352)||(32967300-32967337)
chr8 (315-352)||(44790445-44790482)
[»] chr7 (6 HSPs)
chr7 (315-352)||(7456607-7456644)
chr7 (315-352)||(18235237-18235274)
chr7 (315-352)||(21387503-21387540)
chr7 (315-343)||(2842075-2842103)
chr7 (315-343)||(27234559-27234587)
chr7 (315-351)||(47454052-47454088)
[»] chr6 (1 HSPs)
chr6 (315-352)||(31265826-31265863)
[»] chr2 (2 HSPs)
chr2 (314-351)||(13375211-13375248)
chr2 (315-351)||(28925871-28925907)
[»] chr5 (2 HSPs)
chr5 (315-351)||(6610885-6610921)
chr5 (315-351)||(7613755-7613791)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 51527794 - 51527554
Alignment:
Q  29 agtttgtgaacacactcaccatattaatcaaggaataagatcatcgtttctgtgctaatgtcagggttcagaaaatgttggagggaaattgaattgatgt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  51527794 agtttgtgaacacactcaccatattaatcaaggaataagatcatcgttgctgtggtaatgttagggttcagaaaatgttggagggaaattgaattgatgt 51527695  T
Q  129 gattgatctaataagaagaaaacgggtcggagtagattgtgatcagaatattatgggctttttaaatcactacaccgtcttttccttattgctgc----- 223  Q
    || |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  51527694 gagtgatataataagaagaaaacggatcggagtagattgtgatcagaatattatgggctttttaaatcactacaccgtcttttccttattgctgctgctg 51527595  T
Q  224 ----tgctaaatgcacatccctactcccaagtccgcgccca 260  Q
        |||||||||||||||||||||||||||||||||||||    
T  51527594 ctgctgctaaatgcacatccctactcccaagtccgcgccca 51527554  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 29815096 - 29815133
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtgg 352  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  29815096 gtattcatgcattctccactatcataaatctaaagtgg 29815133  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 48740604 - 48740567
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtgg 352  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  48740604 gtattggtgcattctccactatcataaatgtaaagtgg 48740567  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 40881216 - 40881252
Alignment:
Q  316 tattgatgcattctccactatcataaatttaaagtgg 352  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  40881216 tattgatgtattctccactatcataaatgtaaagtgg 40881252  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 48744343 - 48744307
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtg 351  Q
    ||||||||||||||||||||||||||||| |||||||    
T  48744343 gtattgatgcattctccactatcataaatgtaaagtg 48744307  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 33994741 - 33994704
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtgg 352  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  33994741 gtattggtgcattctccactatcataaatgtaaagtgg 33994704  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 32827327 - 32827363
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtg 351  Q
    |||||| |||||||||||||||||||||| |||||||    
T  32827327 gtattggtgcattctccactatcataaatgtaaagtg 32827363  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 7785298 - 7785334
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtg 351  Q
    ||||||||||||||||||||||||||||| |||||||    
T  7785298 gtattgatgcattctccactatcataaatgtaaagtg 7785334  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 26756060 - 26756024
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtg 351  Q
    ||||||||||||||||||||||||||||| |||||||    
T  26756060 gtattgatgcattctccactatcataaatataaagtg 26756024  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 48242614 - 48242651
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtgg 352  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  48242614 gtattgatgcatcctccactatcataaatgtaaagtgg 48242651  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 343
Target Start/End: Original strand, 5040599 - 5040627
Alignment:
Q  315 gtattgatgcattctccactatcataaat 343  Q
    |||||||||||||||||||||||||||||    
T  5040599 gtattgatgcattctccactatcataaat 5040627  T

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Target: scaffold0058 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 14540 - 14503
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtgg 352  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  14540 gtattgatgcattctccactgtcataaatgtaaagtgg 14503  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 9014787 - 9014750
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtgg 352  Q
    |||||||||||||||||||||||||||||  |||||||    
T  9014787 gtattgatgcattctccactatcataaatgcaaagtgg 9014750  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 32967300 - 32967337
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtgg 352  Q
    |||||| | |||||||||||||||||||||||||||||    
T  32967300 gtattggtccattctccactatcataaatttaaagtgg 32967337  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 44790445 - 44790482
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtgg 352  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  44790445 gtattggtgcattctccactatcataaatgtaaagtgg 44790482  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 7456607 - 7456644
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtgg 352  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  7456607 gtattgatgtattctccactatcataaatataaagtgg 7456644  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 18235274 - 18235237
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtgg 352  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  18235274 gtattggtgcattctccactatcataaatgtaaagtgg 18235237  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 21387503 - 21387540
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtgg 352  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  21387503 gtattggtgcattctccactatcataaatgtaaagtgg 21387540  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 343
Target Start/End: Original strand, 2842075 - 2842103
Alignment:
Q  315 gtattgatgcattctccactatcataaat 343  Q
    |||||||||||||||||||||||||||||    
T  2842075 gtattgatgcattctccactatcataaat 2842103  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 343
Target Start/End: Complemental strand, 27234587 - 27234559
Alignment:
Q  315 gtattgatgcattctccactatcataaat 343  Q
    |||||||||||||||||||||||||||||    
T  27234587 gtattgatgcattctccactatcataaat 27234559  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 47454088 - 47454052
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtg 351  Q
    |||||| |||||||||||||||||||||| |||||||    
T  47454088 gtattggtgcattctccactatcataaatgtaaagtg 47454052  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 31265863 - 31265826
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtgg 352  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  31265863 gtattggtgcattctccactatcataaatgtaaagtgg 31265826  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 13375211 - 13375248
Alignment:
Q  314 ggtattgatgcattctccactatcataaatttaaagtg 351  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  13375211 ggtattggtgcattctccactatcataaatgtaaagtg 13375248  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 28925871 - 28925907
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtg 351  Q
    ||||||||||||||||||||||||||| | |||||||    
T  28925871 gtattgatgcattctccactatcataattgtaaagtg 28925907  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 6610921 - 6610885
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtg 351  Q
    |||||| |||||||||||||||||||||| |||||||    
T  6610921 gtattggtgcattctccactatcataaatgtaaagtg 6610885  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 7613791 - 7613755
Alignment:
Q  315 gtattgatgcattctccactatcataaatttaaagtg 351  Q
    |||||| |||||||||||||||||||||| |||||||    
T  7613791 gtattggtgcattctccactatcataaatgtaaagtg 7613755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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