View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_high_23 (Length: 462)

Name: NF0841_high_23
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_high_23
NF0841_high_23
[»] chr4 (3 HSPs)
chr4 (31-451)||(970176-970599)
chr4 (166-200)||(54521919-54521953)
chr4 (166-198)||(5912560-5912592)
[»] chr7 (2 HSPs)
chr7 (51-129)||(20553896-20553974)
chr7 (176-220)||(8688210-8688254)
[»] chr2 (2 HSPs)
chr2 (176-235)||(10582321-10582380)
chr2 (48-90)||(10953494-10953536)
[»] chr6 (3 HSPs)
chr6 (146-250)||(30863912-30864015)
chr6 (48-80)||(4433100-4433132)
chr6 (49-81)||(14161272-14161304)
[»] chr1 (2 HSPs)
chr1 (157-222)||(45464078-45464143)
chr1 (180-220)||(6373233-6373273)
[»] chr8 (1 HSPs)
chr8 (54-130)||(40756699-40756775)
[»] chr3 (1 HSPs)
chr3 (176-220)||(25181661-25181705)


Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 31 - 451
Target Start/End: Complemental strand, 970599 - 970176
Alignment:
Q  31 atatatcgtaaatacagctcaaaataattcaagatttaagtcataaatcagctgag--aaaataaaaatgattgactatacaaagttga-caaaaacaag 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||    
T  970599 atatatcgtaaatacagctcaaaataattcaagatttaagtcataaatcagctgaagaaaaataaaaatgattgactatacaaagttgaacaaaaacaag 970500  T
Q  128 tggatggattgactaaccttaggtattggttcattaccatgaatcagtattcatcatagtgaatcaggatttaagataagattcatgtgcaaaattgata 227  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  970499 tggatggattgactaaccttaggtaatggttcattacaatgaatcagtattcatcatagtgaatcaggatttaagataaaattcatgtgcaaaattgata 970400  T
Q  228 cgcactaggaattgtatcgattggattgactagtatgtaccgaagatactggtaaccatgccctgatcgtatgtgctatgtacccttttgtcaggttgtt 327  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  970399 cgcactaggaattgtagcgattggattgactagtatgtcccgaagatactggtaaccatgccctgatcgtatgtgctatgtacccttttgtcaggttgtt 970300  T
Q  328 atcttctggaactactattatccctcgagcggcagcacctgttactgatgtgcaggtagtcagtgtgatcaaactatgtgattgtcattatttacgtgtg 427  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  970299 atcttctggaactactattatccctcgagcggcagcacctgctactgatgtgcaggtagtcagtgtgatcaaattatgtgattgtcattatttacgtgtg 970200  T
Q  428 aaacagcctagacccatggttcat 451  Q
    ||||||||||||||||||||||||    
T  970199 aaacagcctagacccatggttcat 970176  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 54521919 - 54521953
Alignment:
Q  166 atgaatcagtattcatcatagtgaatcaggattta 200  Q
    ||||||||| |||||||||||||||||||||||||    
T  54521919 atgaatcaggattcatcatagtgaatcaggattta 54521953  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 5912592 - 5912560
Alignment:
Q  166 atgaatcagtattcatcatagtgaatcaggatt 198  Q
    ||||||||| |||||||||||||||||||||||    
T  5912592 atgaatcaggattcatcatagtgaatcaggatt 5912560  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 20553896 - 20553974
Alignment:
Q  51 aaaataattcaagatttaagtcataaatcagctgagaaaataaaaatgattgactatacaaagttgacaaaaacaagtg 129  Q
    ||||||||| ||||||||||||||||||||  ||| |||| |||| ||  |||||| | |||||||||||||| |||||    
T  20553896 aaaataattgaagatttaagtcataaatcaaatgacaaaagaaaagtgtctgactaaaaaaagttgacaaaaaaaagtg 20553974  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 8688254 - 8688210
Alignment:
Q  176 attcatcatagtgaatcaggatttaagataagattcatgtgcaaa 220  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||    
T  8688254 attcatcataatgaatcaggattcaagatgagattcatgtgcaaa 8688210  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 10582321 - 10582380
Alignment:
Q  176 attcatcatagtgaatcaggatttaagataagattcatgtgcaaaattgatacgcactag 235  Q
    ||||||||||| ||||||||| | ||||| |||||||||| |||||| ||||| ||||||    
T  10582321 attcatcatagagaatcaggactcaagatgagattcatgttcaaaatagatacacactag 10582380  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 10953494 - 10953536
Alignment:
Q  48 ctcaaaataattcaagatttaagtcataaatcagctgagaaaa 90  Q
    ||||||||||||||||||| |||||||||||||  ||||||||    
T  10953494 ctcaaaataattcaagattcaagtcataaatcaaatgagaaaa 10953536  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 30863912 - 30864015
Alignment:
Q  146 ttaggtattggttcattaccatgaatcagtattcatcatagtgaatcaggatttaagataagattcatgtgcaaaattgatacgcactag-gaattgtat 244  Q
    ||||||| || |||||||  ||||||||  |||||||||||||||| ||| || ||||| |||||||||| | |||| ||||| |||||| || ||||||    
T  30863912 ttaggtaatgattcattagaatgaatcacaattcatcatagtgaat-agggttgaagatgagattcatgt-ccaaatagatacacactagagatttgtat 30864009  T
Q  245 cgattg 250  Q
    ||||||    
T  30864010 cgattg 30864015  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 4433100 - 4433132
Alignment:
Q  48 ctcaaaataattcaagatttaagtcataaatca 80  Q
    ||||||||||||||||||| |||||||||||||    
T  4433100 ctcaaaataattcaagattcaagtcataaatca 4433132  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 14161304 - 14161272
Alignment:
Q  49 tcaaaataattcaagatttaagtcataaatcag 81  Q
    |||||||||||||||||| ||||||||||||||    
T  14161304 tcaaaataattcaagattcaagtcataaatcag 14161272  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 45464143 - 45464078
Alignment:
Q  157 ttcattaccatgaatcagtattcatcatagtgaatcaggatttaagataagattcatgtgcaaaat 222  Q
    |||||||| || |||| | ||||||||||| ||||||||||||||| |  ||||||||| ||||||    
T  45464143 ttcattacaataaatcgggattcatcatagcgaatcaggatttaagttgggattcatgttcaaaat 45464078  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 6373273 - 6373233
Alignment:
Q  180 atcatagtgaatcaggatttaagataagattcatgtgcaaa 220  Q
    ||||||||||||||||||| ||||| |||||||||| ||||    
T  6373273 atcatagtgaatcaggattcaagatgagattcatgtccaaa 6373233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 40756775 - 40756699
Alignment:
Q  54 ataattcaagatttaagtcataaatcagctgagaaaataaaaatgattgactatacaaagttgacaaaaacaagtgg 130  Q
    |||||| |||||| |||||||||||||  ||| |||| |||  ||  ||| ||||||||||||||||||| ||||||    
T  40756775 ataattaaagattcaagtcataaatcaaatgacaaaagaaaggtggatgattatacaaagttgacaaaaagaagtgg 40756699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 25181661 - 25181705
Alignment:
Q  176 attcatcatagtgaatcaggatttaagataagattcatgtgcaaa 220  Q
    ||||||||||||||||| ||||||||||| | |||||||| ||||    
T  25181661 attcatcatagtgaatcgggatttaagatgatattcatgtccaaa 25181705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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