View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_high_24 (Length: 452)
Name: NF0841_high_24
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 106 - 380
Target Start/End: Complemental strand, 41182983 - 41182726
Alignment:
| Q |
106 |
atttaatcataaatgagcaatagtacaaaaaatgacagttgctttgagcctactacaagggggaaatgtcttgctaacttttaaaagtaactgcagttgt |
205 |
Q |
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| T |
41182983 |
atttaattagaaatgagcaatagtacaaaaa-tgacagttgctttgagcctactacaagggggaaatgtcttgctaacttttaaaagtaactacagttgt |
41182885 |
T |
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| Q |
206 |
gatgttcatttgcaatttgccttattttacaatccaaacacttttacatgctgtaggacaagtacccttggatgaagtgtaatgactaatgacccacact |
305 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41182884 |
gatgttcatttgcaatt-gccttattttacaatccaaacacttttacatgctgtaggacaagtacccttggatgaagtgtaatgactaatgacccacact |
41182786 |
T |
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| Q |
306 |
cagcaaaaacaacagaccctgaaccaaagatttgtactgttaagcatgtaaagggtgaaacaaactaatccaata |
380 |
Q |
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| T |
41182785 |
cagca---------------gaaccaaagatttgtactgttaagcatgtaaagggtgaaacaaactaatccaata |
41182726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 41183123 - 41183038
Alignment:
| Q |
29 |
aaaaacatgatgacatcacttgttaaaaggaaaaattaaaacaannnnnnnnaatgttctttaaaggcaaataacacatttaatca |
114 |
Q |
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| T |
41183123 |
aaaaacatgatgacatcacttgttaaaaggaaaaattaaaacaattttttttaatgttctttaaaggcaaataacacatttaatca |
41183038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 442
Target Start/End: Complemental strand, 41182692 - 41182664
Alignment:
| Q |
414 |
ggacaatagcattaatttgttcagaatta |
442 |
Q |
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| T |
41182692 |
ggacaatagcattaatttgttcagaatta |
41182664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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