View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0841_high_27 (Length: 434)
Name: NF0841_high_27
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_high_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 30 - 425
Target Start/End: Original strand, 43856682 - 43857088
Alignment:
| Q |
30 |
ctggctagctttcatggagatctatgtcatgatatattctctttaattatc------ttgtttttgtttactttcttgaactcccttcattcttcaatct |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43856682 |
ctggctagctttcatggagatctatgtcatgatatattctctttaattatcattatcttgtttttgtttactttcttgaactcccttcattcttcaatct |
43856781 |
T |
|
| Q |
124 |
cgtgctttgcatgcaacttgattaa-------tattgagaggaaaaaaggccctttcgtccaattttacattgaatattgtgaatgtagttannnnnnnn |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43856782 |
cgtgctttgcatgcaacttgattaaagacatttattgagaggaaaaaaggtcctttcgtccaattttacattgaatattgtgaatgtagttattattatt |
43856881 |
T |
|
| Q |
217 |
nnnnnnnnnnnnaatgtttcacaccttgttatagttgacaaaatggccaattgagagcttgtttaagagagagattgatatatagatcagagatcgatct |
316 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43856882 |
attatttttt--aatgtttcacacctcgttatagttgacaaaatggccaattgagagcttgtttaagagagagattgatatatagatcagagatcgatct |
43856979 |
T |
|
| Q |
317 |
atcannnnnnnnnnnnnnnnnnnnnnnnaacgttatgtagtcatagatggaaagtcttttttccatctatcaatagaaatgaagacaatctcagctctaa |
416 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43856980 |
atcaatttatttttatttaattattttaaacgttatgtagtcatagatggaaagtcttttttccatctatcaatagaaatgaagacaatctcagctctaa |
43857079 |
T |
|
| Q |
417 |
tagaattat |
425 |
Q |
| |
|
|| |||||| |
|
|
| T |
43857080 |
taaaattat |
43857088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 17751627 - 17751691
Alignment:
| Q |
59 |
tgatatattctctttaattatcttgtttttgtttactttcttgaactcccttcattcttcaatct |
123 |
Q |
| |
|
||||||||| || | |||| ||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
17751627 |
tgatatattttcatcaattctcttgtttttgtttaatttcttgaactatgttcattcttcaatct |
17751691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2162 times since January 2019
Visitors: 6159