View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_high_3 (Length: 825)

Name: NF0841_high_3
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_high_3
NF0841_high_3
[»] chr2 (6 HSPs)
chr2 (335-731)||(26661746-26662144)
chr2 (4-237)||(26661410-26661646)
chr2 (510-717)||(26666163-26666368)
chr2 (102-229)||(6049912-6050043)
chr2 (591-660)||(26662301-26662370)
chr2 (658-711)||(26665145-26665198)
[»] chr6 (4 HSPs)
chr6 (4-237)||(21481328-21481564)
chr6 (335-507)||(21481663-21481839)
chr6 (107-237)||(19701164-19701298)
chr6 (591-652)||(19702539-19702600)
[»] chr7 (2 HSPs)
chr7 (28-223)||(13331531-13331727)
chr7 (28-223)||(13342446-13342642)
[»] chr5 (1 HSPs)
chr5 (28-223)||(5672002-5672198)
[»] chr8 (4 HSPs)
chr8 (28-237)||(32717808-32718020)
chr8 (28-237)||(10637574-10637786)
chr8 (658-711)||(10641344-10641397)
chr8 (658-711)||(32714210-32714263)
[»] chr1 (5 HSPs)
chr1 (28-237)||(22893729-22893941)
chr1 (591-660)||(22902560-22902629)
chr1 (584-659)||(46886067-46886142)
chr1 (102-229)||(44306129-44306259)
chr1 (658-711)||(21532599-21532652)
[»] chr3 (1 HSPs)
chr3 (45-223)||(15761973-15762154)
[»] scaffold0586 (1 HSPs)
scaffold0586 (107-237)||(9597-9731)
[»] chr4 (1 HSPs)
chr4 (119-229)||(13893697-13893810)
[»] scaffold0697 (1 HSPs)
scaffold0697 (658-711)||(3557-3610)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 335 - 731
Target Start/End: Original strand, 26661746 - 26662144
Alignment:
Q  335 ccactgtttggcaattcttgttttttcctaatcatgaatcaatgcnnnnnnnnggttagagacaacttgtttttattaacccaccttc---taacttttc 431  Q
    |||||||||||||||||||||||||||| |||||||||||||||         |||||||||||||||||||||||||| ||||||||   ||||||||     
T  26661746 ccactgtttggcaattcttgttttttcccaatcatgaatcaatg-aaaaaaaaggttagagacaacttgtttttattaaaccaccttcttctaacttttt 26661844  T
Q  432 ccaaaatatgccaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagtctgtgttataactctaattttga 531  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26661845 ccaaaatatgctaataaccataacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagcctgtgttataactctaattttga 26661944  T
Q  532 aaatgaagtatataacatgttcttttttcaacttttatactgcttaatattttccatagatgatgttcccaaatgtgacatattatttaagaaagtgaga 631  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  26661945 aaatgaagtatataacatgttcttttttcaacttttatactgcttaatattatccatagatgatgttcccaaatgtgacatattatctaagaaagtgaga 26662044  T
Q  632 tttgtcaaatttggaatcactatatatttattagttgtgtaatgacatcaattatactttgaattcatttactctattggttgtgtatctagaaccatgt 731  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26662045 tttgtcaaatttggaatcattatatatttattagttgtgtaatgacatcaattatactttgaattcatttactctattggttgtgtatctagaaccatgt 26662144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 26661410 - 26661646
Alignment:
Q  4 atctccaagaatatacctcttctacccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaa 103  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661410 atctccaacaaaatacctcttctacccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaa 26661509  T
Q  104 actcatgatctttgtgtgtgcatcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccatt 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||    
T  26661510 acccatgatctttgtgtgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccatt 26661609  T
Q  201 actcaacatagatttggtgattgatatcaattctctg 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  26661610 actcaacatagatttggtgattgatatcaattctctg 26661646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 510 - 717
Target Start/End: Original strand, 26666163 - 26666368
Alignment:
Q  510 tgtgttataactctaattttgaaaatgaagtatataacatgttcttttttcaacttttatactgcttaatattttccatagatgatgttcccaaatgtga 609  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  26666163 tgtgttataactctaattttgaaa-tgaagtatataacatgttcttttttcaacttttatactgcttaatattatccatagatgatgttcccaagtgtga 26666261  T
Q  610 catattatttaagaaagtgagatttgtcaaatttggaatcactatatatttattagttgtgtaatgacatcaattatactttgaattcatttactctatt 709  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26666262 catattatctaagaaagtgagatttgtcaaatttggaatcactatata-ttattagttgtgtaatgacatcaattatactttgaattcatttactctatt 26666360  T
Q  710 ggttgtgt 717  Q
    ||||||||    
T  26666361 ggttgtgt 26666368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 6049912 - 6050043
Alignment:
Q  102 aaactcatgatctttgtg-tgtgcatcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttcc 197  Q
    |||| ||| ||||||||| ||| |||||||||||||| | || |||| | ||||||||||||||    ||||||||||| |||||| |   |||||||||    
T  6049912 aaacccatcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttcc 6050011  T
Q  198 attactcaacatagatttggtgattgatatca 229  Q
    ||||||||||||||||||||||||||||||||    
T  6050012 attactcaacatagatttggtgattgatatca 6050043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 591 - 660
Target Start/End: Original strand, 26662301 - 26662370
Alignment:
Q  591 atgatgttcccaaatgtgacatattatttaagaaagtgagatttgtcaaatttggaatcactatatattt 660  Q
    ||||| || |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26662301 atgatatttccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatatattt 26662370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 711
Target Start/End: Original strand, 26665145 - 26665198
Alignment:
Q  658 tttattagttgtgtaatgacatcaattatactttgaattcatttactctattgg 711  Q
    ||||||||||||||||| || || |||||||||  |||| ||||||||||||||    
T  26665145 tttattagttgtgtaatcacttcgattatacttaaaatttatttactctattgg 26665198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 195; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 21481328 - 21481564
Alignment:
Q  4 atctccaagaatatacctcttctacccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaa 103  Q
    |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481328 atctccaacaaaatacctcttctacccttgccattcctgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaa 21481427  T
Q  104 actcatgatctttgtgtgtgcatcaactgcttgccaattgggtttttgatttcactcttc---tgaaggtaccatctaatttcatcataattcttccatt 200  Q
    || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   | |||||| ||||||||||||||||||||||||||||    
T  21481428 acccatgatctttgtgtgtgcatcaactacttgccaattgggtttttgatttcactcttctattcaaggtaacatctaatttcatcataattcttccatt 21481527  T
Q  201 actcaacatagatttggtgattgatatcaattctctg 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  21481528 actcaacatagatttggtgattgatatcaattctctg 21481564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 335 - 507
Target Start/End: Original strand, 21481663 - 21481839
Alignment:
Q  335 ccactgtttggcaattcttgtttttt-cctaatcatgaatcaatgcnnnnnnnnggttagagacaacttgtttttattaacccaccttc---taactttt 430  Q
    |||||||||||||||||||||||||| || ||||||||||||||||        | |||||||||||||||||||||||||||||||||   ||||||||    
T  21481663 ccactgtttggcaattcttgtttttttcccaatcatgaatcaatgcaaaaaaaagtttagagacaacttgtttttattaacccaccttcttctaactttt 21481762  T
Q  431 cccaaaatatgccaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataag 507  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481763 cccaaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataag 21481839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 107 - 237
Target Start/End: Original strand, 19701164 - 19701298
Alignment:
Q  107 catgatctttgt-gtgtgcatcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccattac 202  Q
    |||||||||||| |||| |||||||||||||| | ||| ||||| ||||||||| ||||    ||||||||||||||||||||  |||||||||||||||    
T  19701164 catgatctttgtagtgttcatcaactgcttgctatttgagttttggatttcacttttctcttcaaggtaccatctaatttcattttaattcttccattac 19701263  T
Q  203 tcaacatagatttggtgattgatatcaattctctg 237  Q
    |||||||||||||| ||||| |||||| |||||||    
T  19701264 tcaacatagatttgttgatttatatcatttctctg 19701298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 652
Target Start/End: Original strand, 19702539 - 19702600
Alignment:
Q  591 atgatgttcccaaatgtgacatattatttaagaaagtgagatttgtcaaatttggaatcact 652  Q
    ||||| ||||||| ||||| ||||||| ||||||||||| |||||||||||||  |||||||    
T  19702539 atgatattcccaagtgtgaaatattatctaagaaagtgaaatttgtcaaatttaaaatcact 19702600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 13331727 - 13331531
Alignment:
Q  28 cccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaactcatgatctttgtgtgtgcatc 127  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| | |||| |||||||   ||| |||||||||||||||| ||||    
T  13331727 cccttgccattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 13331630  T
Q  128 aactgcttgccaattgggtttttgatttcactcttc---tgaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 223  Q
    ||||||||||  |||| |||||||||||||||||||   | ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13331629 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 13331531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 13342642 - 13342446
Alignment:
Q  28 cccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaactcatgatctttgtgtgtgcatc 127  Q
    |||||| |||||||||||||||||  ||||||||||||||||||||||||||||||| | |||| |||||||   ||| |||||||||||||||| ||||    
T  13342642 cccttgtcattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 13342545  T
Q  128 aactgcttgccaattgggtttttgatttcactcttc---tgaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 223  Q
    ||||||||||  |||| |||||||||||||||||||   | ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13342544 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 13342446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 5e-55; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 5672198 - 5672002
Alignment:
Q  28 cccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaactcatgatctttgtgtgtgcatc 127  Q
    |||||| |||||||||||||||||  ||||||||||||||||||||||||||||||| | |||| |||||||   ||| |||||||||||||||| ||||    
T  5672198 cccttgtcattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 5672101  T
Q  128 aactgcttgccaattgggtttttgatttcactcttc---tgaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 223  Q
    ||||||||||  |||| |||||||||||||||||||   | ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  5672100 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 5672002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 7e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 32718020 - 32717808
Alignment:
Q  28 cccttgccattcccgctattctttttctctg--attcccgctaaacattttcacccatgatattctgtataaaaagaaactcatgatctttgt-gtgtgc 124  Q
    ||||||||||||||||||   ||||||||||  |||||||||||   |||||||||||||| |||| || |||||||||| ||| |||||||| |||| |    
T  32718020 cccttgccattcccgctaaa-tttttctctgctattcccgctaatt-ttttcacccatgatcttctata-aaaaagaaacccattatctttgtagtgttc 32717924  T
Q  125 atcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgat 221  Q
    |||||||||||||   ||| ||||| ||||||||||||||    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  32717923 atcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagatttggtgat 32717824  T
Q  222 tgatatcaattctctg 237  Q
    | |||||| |||||||    
T  32717823 ttatatcatttctctg 32717808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 10637574 - 10637786
Alignment:
Q  28 cccttgccattcccgctattctttttctctg--attcccgctaaacattttcacccatgatattctgtataaaaagaaactcatgatctttgt-gtgtgc 124  Q
    ||||||||||||||||||   ||||||||||  |||||||||||   |||||||||||||| |||| || |||||||||| ||| |||||||| |||| |    
T  10637574 cccttgccattcccgctaaa-tttttctctgctattcccgctaatt-ttttcacccatgatcttctata-aaaaagaaacccattatctttgtagtgttc 10637670  T
Q  125 atcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgat 221  Q
    |||||||||||||   ||| ||||| ||||||||||||||    |||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  10637671 atcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtatcatctaatttcattttaattcttccattactcaacatagatttggtgat 10637770  T
Q  222 tgatatcaattctctg 237  Q
    | |||||| |||||||    
T  10637771 ttatatcatttctctg 10637786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 711
Target Start/End: Original strand, 10641344 - 10641397
Alignment:
Q  658 tttattagttgtgtaatgacatcaattatactttgaattcatttactctattgg 711  Q
    |||||||||||| |||| || || |||||||||| |||| ||||||||||||||    
T  10641344 tttattagttgtataatcacttcgattatactttaaatttatttactctattgg 10641397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 711
Target Start/End: Complemental strand, 32714263 - 32714210
Alignment:
Q  658 tttattagttgtgtaatgacatcaattatactttgaattcatttactctattgg 711  Q
    |||||||||||| |||| || || |||||||||| |||| ||||||||||||||    
T  32714263 tttattagttgtataatcacttcgattatactttaaatttatttactctattgg 32714210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 22893729 - 22893941
Alignment:
Q  28 cccttgccattcccgctattctttttctctg--attcccgctaaacattttcacccatgatattctgtataaaaagaaactcatgatctttgt-gtgtgc 124  Q
    ||||||||||||||||||   ||||||||||  |||||||||||   |||||||||||||| |||| || |||| ||||| |||||||||||| |||| |    
T  22893729 cccttgccattcccgctaaa-tttttctctgctattcccgctaatt-ttttcacccatgatcttctata-aaaaggaaacccatgatctttgtagtgttc 22893825  T
Q  125 atcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgat 221  Q
    |||||||||||||   ||| ||||| ||||||||||||||    |||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  22893826 atcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaacatctaatttcattttaattcttccattactcaacatagatttggtgat 22893925  T
Q  222 tgatatcaattctctg 237  Q
    | |||||| |||||||    
T  22893926 ttatatcatttctctg 22893941  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 591 - 660
Target Start/End: Original strand, 22902560 - 22902629
Alignment:
Q  591 atgatgttcccaaatgtgacatattatttaagaaagtgagatttgtcaaatttggaatcactatatattt 660  Q
    ||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  22902560 atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatgtattt 22902629  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 584 - 659
Target Start/End: Complemental strand, 46886142 - 46886067
Alignment:
Q  584 tccatagatgatgttcccaaatgtgacatattatttaagaaagtgagatttgtcaaatttggaatcactatatatt 659  Q
    |||||| ||||| ||||||| ||| | || |||| ||||||||||||||||||||||||| |||||||||||||||    
T  46886142 tccatatatgatattcccaagtgtaaaattttatctaagaaagtgagatttgtcaaatttagaatcactatatatt 46886067  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 44306129 - 44306259
Alignment:
Q  102 aaactcatgatctttgtg-tgtgcatcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttcc 197  Q
    |||| ||| ||||||||| ||| |||||||||||||| | || |||| | ||||||||||||||    ||||||||||| |||| | |   |||||||||    
T  44306129 aaacccatcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatt-cttttcaattcttcc 44306227  T
Q  198 attactcaacatagatttggtgattgatatca 229  Q
    ||||||||||||||||||||| ||||||||||    
T  44306228 attactcaacatagatttggtcattgatatca 44306259  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 711
Target Start/End: Complemental strand, 21532652 - 21532599
Alignment:
Q  658 tttattagttgtgtaatgacatcaattatactttgaattcatttactctattgg 711  Q
    ||||||||||||||||| || || |||||||||| |||| ||||||||||||||    
T  21532652 tttattagttgtgtaatcacttcgattatactttaaatttatttactctattgg 21532599  T

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Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 15762154 - 15761973
Alignment:
Q  45 attctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaactcatgatctttgtgtgtgcatcaactgcttgccaattgg 144  Q
    |||||||||||||||||||| |||||||||||||| |||| | |||| ||||||||  | |  ||||||||||| ||| ||||||||  |||| |||| |    
T  15762154 attctttttctctgattcccactaaacattttcactcatgttcttctatataaaaaacatcatatgatctttgtatgttcatcaactatttgctaatttg 15762055  T
Q  145 gtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 223  Q
    | ||||||||||||| ||||    || ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  15762054 ggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttctattactcaacatagatttggtgattg 15761973  T

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Target: scaffold0586 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 107 - 237
Target Start/End: Original strand, 9597 - 9731
Alignment:
Q  107 catgatctttgt-gtgtgcatcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccattac 202  Q
    |||||||||||| |||| |||||||||||||    ||| ||||| ||||||||||||||    ||||||||||||||||||||  |||||||||||||||    
T  9597 catgatctttgtagtgttcatcaactgcttgttgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattac 9696  T
Q  203 tcaacatagatttggtgattgatatcaattctctg 237  Q
    |||||||||||||||||||| |||||| |||||||    
T  9697 tcaacatagatttggtgatttatatcatttctctg 9731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 13893810 - 13893697
Alignment:
Q  119 gtgtgcatcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccattactcaacatagattt 215  Q
    |||| |||||||||||||  | || |||| | ||||||||||||||    ||||||||||| |||||| |   |||||||||||||||||||||||||||    
T  13893810 gtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagattt 13893711  T
Q  216 ggtgattgatatca 229  Q
    ||||||||||||||    
T  13893710 ggtgattgatatca 13893697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 711
Target Start/End: Complemental strand, 3610 - 3557
Alignment:
Q  658 tttattagttgtgtaatgacatcaattatactttgaattcatttactctattgg 711  Q
    ||||||||||||||||| || || |||||||||| |||| ||||||||||||||    
T  3610 tttattagttgtgtaatcacttcgattatactttaaatttatttactctattgg 3557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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