View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_high_34 (Length: 370)

Name: NF0841_high_34
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_high_34
NF0841_high_34
[»] chr2 (24 HSPs)
chr2 (29-359)||(39371946-39372276)
chr2 (290-358)||(39379530-39379598)
chr2 (101-222)||(39179550-39179673)
chr2 (251-358)||(39386325-39386432)
chr2 (109-223)||(39386436-39386551)
chr2 (101-222)||(39224558-39224679)
chr2 (288-358)||(39217461-39217531)
chr2 (286-358)||(39179713-39179785)
chr2 (286-358)||(39396222-39396294)
chr2 (259-351)||(39224691-39224783)
chr2 (296-340)||(39419841-39419885)
chr2 (107-183)||(39188479-39188557)
chr2 (107-181)||(39419997-39420071)
chr2 (288-361)||(2363546-2363619)
chr2 (296-344)||(39471488-39471537)
chr2 (107-175)||(39452109-39452177)
chr2 (288-340)||(44748567-44748619)
chr2 (101-183)||(39139828-39139908)
chr2 (288-323)||(44625143-44625178)
chr2 (276-358)||(39125272-39125354)
chr2 (137-183)||(39379675-39379721)
chr2 (288-344)||(39139996-39140052)
chr2 (107-183)||(39145001-39145077)
chr2 (288-320)||(39425302-39425334)
[»] chr5 (3 HSPs)
chr5 (107-183)||(33563213-33563289)
chr5 (278-358)||(33563372-33563452)
chr5 (299-340)||(17061239-17061280)
[»] chr6 (1 HSPs)
chr6 (286-358)||(16115260-16115332)
[»] chr4 (1 HSPs)
chr4 (292-359)||(33153120-33153187)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 29 - 359
Target Start/End: Original strand, 39371946 - 39372276
Alignment:
Q  29 aataactatggacattatatgcaaagatactaagattaatttattagttggtggagaaaaactgatatgtgattggttttaatgcttggaaagtgaagca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39371946 aataactatggacattatatgcaaagatactaagattaatttattagttggtggagaaaaactgatatgtgattggttttaatgcttggaaagtgaagca 39372045  T
Q  129 gacttgaaatttatctctccttttatgtatctcttctattttataaatggtttgaannnnnnngaaatattcagtacaatctgcttaattttttccttca 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  39372046 gacttgaaatttatctctccttttatgtatctcttctattttataaatggtttgaatttttttgaaatattcagtacaatctgcttaattttttccttca 39372145  T
Q  229 ttaattcgaagtttataacttattttatgcctgttctagtaagttacggtgatgtggaatttcttgcaccttgcagattttgttgagaatcttattagga 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372146 ttaattcgaagtttataacttattttatgcctgttctagtaagttacggtgatgtggaatttcttgcaccttgcagattttgttgagaatcttattagga 39372245  T
Q  329 ggaagcaatttgttgtagctgttagattcat 359  Q
    |||||||||||||||||||||||||||||||    
T  39372246 ggaagcaatttgttgtagctgttagattcat 39372276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 39379598 - 39379530
Alignment:
Q  290 tcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattca 358  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  39379598 tcttgcaccttgcagattttgttgagaatcttatcaagaggaagcaatttgttgtagctgttagattca 39379530  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 39179550 - 39179673
Alignment:
Q  101 ttggttttaatgcttggaaagtgaagcagacttgaaatttatctctcc--ttttatgtatctcttctattttataaatggtttgaannnnnnngaaatat 198  Q
    ||||||||||||||| |||| ||||  ||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||        ||||| |    
T  39179550 ttggttttaatgctttgaaaatgaattagacttgaaatttatctctctctttttatgtatctcttctattttctaaatggtttgataaattgtgaaatgt 39179649  T
Q  199 tcagtacaatctgcttaatttttt 222  Q
    ||||| ||||||||||| ||||||    
T  39179650 tcagttcaatctgcttagtttttt 39179673  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 358
Target Start/End: Complemental strand, 39386432 - 39386325
Alignment:
Q  251 ttttatgcctgttctagtaagttacggtgatgtggaatttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgt 350  Q
    |||||||  ||||||| ||||||| | ||| ||| ||||||||||| ||| ||||||||||| || ||||||| | ||||||||||||||||| ||||||    
T  39386432 ttttatgtatgttctaataagttatgatgaagtgaaatttcttgcatcttccagattttgttaagcatcttatcaagaggaagcaatttgttgaagctgt 39386333  T
Q  351 tagattca 358  Q
    ||||||||    
T  39386332 tagattca 39386325  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 39386551 - 39386436
Alignment:
Q  109 aatgcttggaaagtgaagcagactt-gaaatttatctctccttttatgtatctcttctattttataaatggtttgaannnnnnngaaatattcagtacaa 207  Q
    ||||||| |||| ||||  |||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||        |||||||||||| |||    
T  39386551 aatgctttgaaaatgaattagacttcgaaatttatctctccttttatgtatctcttctagtttctaaatggtttgacaaattttgaaatattcagttcaa 39386452  T
Q  208 tctgcttaattttttc 223  Q
    |||||||| |||||||    
T  39386451 tctgcttagttttttc 39386436  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 39224558 - 39224679
Alignment:
Q  101 ttggttttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggtttgaannnnnnngaaatattc 200  Q
    ||||||||||||||| |||| |||| |||| |||||||||||||||| |||  ||||||| | ||||||| ||||||||||||        |||||||||    
T  39224558 ttggttttaatgctttgaaaatgaaacagaattgaaatttatctctcttttcttgtatctatactattttctaaatggtttgacaaaatttgaaatattc 39224657  T
Q  201 agtacaatctgcttaatttttt 222  Q
    ||| || |||||||||||||||    
T  39224658 agttcattctgcttaatttttt 39224679  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 358
Target Start/End: Original strand, 39217461 - 39217531
Alignment:
Q  288 tttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattca 358  Q
    ||||||||||||||||| ||||||| |||||||||||||||  || |||||||||| ||||||||||||||    
T  39217461 tttcttgcaccttgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattca 39217531  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 39179713 - 39179785
Alignment:
Q  286 aatttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattca 358  Q
    ||||||||||| ||||||||||||||| || ||||||| |  ||||||||| |||||| ||||||||||||||    
T  39179713 aatttcttgcatcttgcagattttgttaagcatcttatcaacaggaagcaaattgttgcagctgttagattca 39179785  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 358
Target Start/End: Complemental strand, 39396294 - 39396222
Alignment:
Q  286 aatttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattca 358  Q
    |||||||||  ||| |||||||||||| | |||||||| ||||| ||||| ||||||||||||||||||||||    
T  39396294 aatttcttgttcctcgcagattttgttaaaaatcttatcaggagaaagcagtttgttgtagctgttagattca 39396222  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 39224691 - 39224783
Alignment:
Q  259 ctgttctagtaagttacggtgatgtggaatttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgtt 351  Q
    ||||| |||||||||  | ||| ||| ||||||||||| ||||||||||||||| ||  |||||| | |||||||||| |||||| |||||||    
T  39224691 ctgttgtagtaagttttgatgaagtgaaatttcttgcatcttgcagattttgttaagcgtcttatcatgaggaagcaaattgttgaagctgtt 39224783  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 39419885 - 39419841
Alignment:
Q  296 accttgcagattttgttgagaatcttattaggaggaagcaatttg 340  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||    
T  39419885 acctcgcagattttgttgagaatcttataaggaggaagcaatttg 39419841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 39188557 - 39188479
Alignment:
Q  107 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttt--tatgtatctcttctattttataaatggtttga 183  Q
    ||||||||| |||| ||||| |||||| ||||||||||||| |||  ||||||| |||||||||||  |||||||||||    
T  39188557 ttaatgcttcgaaattgaagtagacttcaaatttatctctctttttatatgtatttcttctatttttcaaatggtttga 39188479  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 39420071 - 39419997
Alignment:
Q  107 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggttt 181  Q
    |||||||||| ||| ||||  | |||||||||||||||||| ||||| | |||||||| ||||| ||||||||||    
T  39420071 ttaatgcttgtaaaatgaaatatacttgaaatttatctctctttttacgcatctcttccattttctaaatggttt 39419997  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 361
Target Start/End: Original strand, 2363546 - 2363619
Alignment:
Q  288 tttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattcatct 361  Q
    |||| |||||||||||||||||||| |||||||||| | || | |||||| | |||  ||||||||||||||||    
T  2363546 tttcctgcaccttgcagattttgttcagaatcttatcatgaagcagcaatatattgaggctgttagattcatct 2363619  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 39471537 - 39471488
Alignment:
Q  296 accttgcagattttgttgagaat-cttattaggaggaagcaatttgttgt 344  Q
    ||||||||||||||||||||||  |||||||||| |||||||||||||||    
T  39471537 accttgcagattttgttgagaaaacttattaggaagaagcaatttgttgt 39471488  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 39452109 - 39452177
Alignment:
Q  107 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaa 175  Q
    |||||||||||||| ||||   |||||||||| |||||||| ||||||| |||||||| ||||| ||||    
T  39452109 ttaatgcttggaaaatgaaattgacttgaaatgtatctctctttttatgcatctcttccattttctaaa 39452177  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 44748567 - 44748619
Alignment:
Q  288 tttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttg 340  Q
    |||||| ||||||||||||||||||||||||||||| | || |||| ||||||    
T  44748567 tttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttg 44748619  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 39139828 - 39139908
Alignment:
Q  101 ttggttttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggtttga 183  Q
    ||||| ||||||| |||||| ||||  |||||| ||||| |||||||  || |||||||||||| || |||||||||||||||    
T  39139828 ttggtgttaatgcgtggaaaatgaaatagacttcaaattcatctctc--ttcatgtatctcttccatgttataaatggtttga 39139908  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 323
Target Start/End: Original strand, 44625143 - 44625178
Alignment:
Q  288 tttcttgcaccttgcagattttgttgagaatcttat 323  Q
    |||||| |||||||||||||||||||||||||||||    
T  44625143 tttcttacaccttgcagattttgttgagaatcttat 44625178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 358
Target Start/End: Original strand, 39125272 - 39125354
Alignment:
Q  276 ggtgatgtggaatttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattca 358  Q
    ||||| ||| ||||||||  ||||||||| |||||| ||||||||||| | |||  |||||| || || ||||||||||||||    
T  39125272 ggtgaagtgaaatttcttaaaccttgcagtttttgtcgagaatcttatcaagagacagcaatatgatgaagctgttagattca 39125354  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 39379721 - 39379675
Alignment:
Q  137 atttatctctccttttatgtatctcttctattttataaatggtttga 183  Q
    |||||||||||  ||||||||||| ||||||||| ||||||||||||    
T  39379721 atttatctctctatttatgtatcttttctattttctaaatggtttga 39379675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 39139996 - 39140052
Alignment:
Q  288 tttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgt 344  Q
    ||||||| ||||| |||| ||||||||  ||||||| |||| |||||||||||||||    
T  39139996 tttcttgtaccttacagaatttgttgaagatcttatcaggaagaagcaatttgttgt 39140052  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 39145001 - 39145077
Alignment:
Q  107 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggtttga 183  Q
    ||||||||| |||| ||||| || ||| |||| |||||||  || ||||||| |||||||||||  |||||||||||    
T  39145001 ttaatgctttgaaattgaagtaggcttcaaatatatctctttttatatgtatttcttctatttttcaaatggtttga 39145077  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 39425334 - 39425302
Alignment:
Q  288 tttcttgcaccttgcagattttgttgagaatct 320  Q
    ||||||||||||||||||||||||||| |||||    
T  39425334 tttcttgcaccttgcagattttgttgataatct 39425302  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 33563213 - 33563289
Alignment:
Q  107 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggtttga 183  Q
    ||||||||| |||| ||||  |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  33563213 ttaatgctttgaaaatgaaatagacttgaaatttatctctcattttatgtatctcttctattttctaaatggtttga 33563289  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 358
Target Start/End: Original strand, 33563372 - 33563452
Alignment:
Q  278 tgatgtggaatttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattca 358  Q
    ||| ||| ||||||||||| ||||||||||||||| || ||||||| |  ||||||||| |||||| ||||||||||||||    
T  33563372 tgaagtgaaatttcttgcatcttgcagattttgttaagcatcttatcaacaggaagcaaattgttgcagctgttagattca 33563452  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 17061239 - 17061280
Alignment:
Q  299 ttgcagattttgttgagaatcttattaggaggaagcaatttg 340  Q
    ||||||||||||||||||||||||| | ||||||| ||||||    
T  17061239 ttgcagattttgttgagaatcttatcaagaggaaggaatttg 17061280  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 16115260 - 16115332
Alignment:
Q  286 aatttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattca 358  Q
    ||||||||| ||||||||||||||||| |  ||||||| ||||| ||||||||||||| ||||||||||||||    
T  16115260 aatttcttgtaccttgcagattttgttaaatatcttatcaggagaaagcaatttgttgaagctgttagattca 16115332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 33153120 - 33153187
Alignment:
Q  292 ttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattcat 359  Q
    ||||| ||||||||||||||| ||||||||||  ||| |||||||  | ||| |||||||||||||||    
T  33153120 ttgcaacttgcagattttgttcagaatcttatccggaagaagcaacatattgaagctgttagattcat 33153187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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