View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_high_46 (Length: 288)
Name: NF0841_high_46
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 27 - 259
Target Start/End: Complemental strand, 31278744 - 31278512
Alignment:
| Q |
27 |
gatatgactggtactgggacaataaaaatatacaatttaggcgacggaaaagatttcatcagcaatttacctgatgaaattcttcatcacattctttcgt |
126 |
Q |
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| T |
31278744 |
gatatggctggtactgggacaataaaaatatacaatgtaggcgacggaaaagatttcatcagcaatttacctgatgaaattcttcatcacattctttcgt |
31278645 |
T |
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| Q |
127 |
tactccctgccaaagatgcagtaggaacttccatattagcaagaaggtggaagtctttgtggatcgacttatctgcatttaattttgacaggccaaccaa |
226 |
Q |
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| T |
31278644 |
tactccctgccaaagatgccgtaggaacttccatattagcaagaaggtggaagtctttgtggatcgacttatctgcatttaattttgacaggccaaccaa |
31278545 |
T |
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| Q |
227 |
tcaactctttcatctagttcacagactacttaa |
259 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
31278544 |
tcaactctttcatctagttcacagactacttaa |
31278512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 1095059 - 1095109
Alignment:
| Q |
118 |
ttctttcgttactccctgccaaagatgcagtaggaacttccatattagcaa |
168 |
Q |
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| T |
1095059 |
ttctttcgttactccctaccaaagatgctgtaagaacttccatattagcaa |
1095109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 14729470 - 14729410
Alignment:
| Q |
106 |
ttcttcatcacattctttcgttactccctgccaaagatgcagtaggaacttccatattagc |
166 |
Q |
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| T |
14729470 |
ttcttcttcatattctttctttactccctactaaagatgctgtaagaacttccatattagc |
14729410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 9891847 - 9891797
Alignment:
| Q |
118 |
ttctttcgttactccctgccaaagatgcagtaggaacttccatattagcaa |
168 |
Q |
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||||||||||||||||| |||||||||| ||| |||||||||||||||||| |
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| T |
9891847 |
ttctttcgttactccctaccaaagatgctgtaagaacttccatattagcaa |
9891797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 17594017 - 17594077
Alignment:
| Q |
106 |
ttcttcatcacattctttcgttactccctgccaaagatgcagtaggaacttccatattagc |
166 |
Q |
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| T |
17594017 |
ttcttcttcatattctttctttactccctactaaagatgctgtaagaacttccatattagc |
17594077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 16130607 - 16130715
Alignment:
| Q |
106 |
ttcttcatcacattctttcgttactccctgccaaagatgcagtaggaacttccatattagcaagaaggtggaagtctttgtggatcgacttatctgcatt |
205 |
Q |
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| T |
16130607 |
ttcttcttcatattctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtggaagcacttgtggacctacttatctgcctt |
16130706 |
T |
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| Q |
206 |
taattttga |
214 |
Q |
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| ||||||| |
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| T |
16130707 |
tcattttga |
16130715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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