View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_high_58 (Length: 260)

Name: NF0841_high_58
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_high_58
NF0841_high_58
[»] chr7 (4 HSPs)
chr7 (1-232)||(26618213-26618444)
chr7 (3-232)||(26607639-26607878)
chr7 (3-232)||(26620177-26620416)
chr7 (29-61)||(22332390-22332422)
[»] chr8 (2 HSPs)
chr8 (195-226)||(6224132-6224163)
chr8 (10-42)||(36916578-36916610)
[»] chr4 (1 HSPs)
chr4 (185-232)||(37744339-37744386)
[»] chr3 (2 HSPs)
chr3 (177-224)||(25338393-25338440)
chr3 (29-58)||(38245678-38245707)
[»] scaffold0019 (1 HSPs)
scaffold0019 (29-58)||(67995-68024)
[»] chr1 (1 HSPs)
chr1 (29-58)||(42761329-42761358)


Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 26618213 - 26618444
Alignment:
Q  1 ttattgaagtacatcatccggacactattataagtaaaatttactttttaagttcattgaacaacttatatacatatagctaaacatatcaggttcttca 100  Q
    ||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  26618213 ttattgaagtacaccatccggacactattataaataaaaatcactttttaagttcattgaacaacttatctacataaagttaaacatatcaggttcttca 26618312  T
Q  101 ttgcaaagaaagtaggccaaatcacttatttcggtagctttaatgtgtggttattgtgattctagctgnnnnnnnctgcttacagcctgctagaattggt 200  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  26618313 ttgcaaaggaagtaggccaaatcacttatttgggtagctttaatgtgtggttattgtgattctagctgtttttttgtgcttacagcctgctagaattggt 26618412  T
Q  201 tttactttcatggaatataacaatgtcagatc 232  Q
    ||||||||||||||||||||||||||||||||    
T  26618413 tttactttcatggaatataacaatgtcagatc 26618444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 26607639 - 26607878
Alignment:
Q  3 attgaagtacatcatccggacactattataagtaaaatttactttttaagttcattgaacaacttatatacatatagctaaacatatcaggttcttca-- 100  Q
    ||||||||||| |||| |||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||      
T  26607639 attgaagtacaccatctggacactattataagtaaaacttcatttttaagttcattgaacaacttatgtacataaagctaaacatattaggttcttcatt 26607738  T
Q  101 -----------ttgcaaagaaagtaggccaaatcacttatttcggtagctttaatgtgtggttattgtgattctagctgnnnnnnnctgcttacagcctg 189  Q
               |||||||| || || |||||||||||||||| |||| |||||||||||||||||||||||||||||||        | || | ||  ||    
T  26607739 aaaggggtttcttgcaaaggaattatgccaaatcacttatttgggtatctttaatgtgtggttattgtgattctagctgttttttg-ttctcatag--tg 26607835  T
Q  190 ctagaattggttttactttcatggaatataacaatgtcagatc 232  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26607836 ctagaattggttttactttcatggaatataacaatgtcagatc 26607878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 26620177 - 26620416
Alignment:
Q  3 attgaagtacatcatccggacactattataagtaaaattt-actttttaagttcattgaacaacttatatacatatagctaaacatatcaggttcttca- 100  Q
    ||||||||||| |||||| |||||||||||||||||| || ||||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||     
T  26620177 attgaagtacaccatccgaacactattataagtaaaaattcactttttaaattcattgaacaacttatgtacataaagctaaacatatcaggctcttcat 26620276  T
Q  101 ------------ttgcaaagaaagtaggccaaatcacttatttcggtagctttaatgtgtggttattgtgattctagctgnnnnnnnctgcttacagcct 188  Q
                |||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||        ||||||     |    
T  26620277 taaaggggtttcttgcaaaggaattaggccaaatcacttatttgggtagctttaatgtgtggttattgtgattctagctgtcttttg-tgctta---ggt 26620372  T
Q  189 gctagaattggttttactttcatggaatataacaatgtcagatc 232  Q
    ||||| |||||||||||||||||||||||||| |||||||||||    
T  26620373 gctaggattggttttactttcatggaatataaaaatgtcagatc 26620416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 22332422 - 22332390
Alignment:
Q  29 tataagtaaaatttactttttaagttcattgaa 61  Q
    |||||||||||||||| ||||||||||||||||    
T  22332422 tataagtaaaatttacattttaagttcattgaa 22332390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 226
Target Start/End: Complemental strand, 6224163 - 6224132
Alignment:
Q  195 attggttttactttcatggaatataacaatgt 226  Q
    ||||||||||||||||||||||||||||||||    
T  6224163 attggttttactttcatggaatataacaatgt 6224132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 36916578 - 36916610
Alignment:
Q  10 tacatcatccggacactattataagtaaaattt 42  Q
    |||||||||||| ||||||||||||||||||||    
T  36916578 tacatcatccggtcactattataagtaaaattt 36916610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 37744339 - 37744386
Alignment:
Q  185 gcctgctagaattggttttactttcatggaatataacaatgtcagatc 232  Q
    ||||| ||| |||| ||||||||||||||||||||||||||| |||||    
T  37744339 gcctggtaggattgattttactttcatggaatataacaatgtgagatc 37744386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 25338393 - 25338440
Alignment:
Q  177 tgcttacagcctgctagaattggttttactttcatggaatataacaat 224  Q
    ||||||| | ||| ||||||| ||||||||||||||||||||||||||    
T  25338393 tgcttacggtctggtagaattcgttttactttcatggaatataacaat 25338440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 38245707 - 38245678
Alignment:
Q  29 tataagtaaaatttactttttaagttcatt 58  Q
    ||||||||||||||||||||||||||||||    
T  38245707 tataagtaaaatttactttttaagttcatt 38245678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 68024 - 67995
Alignment:
Q  29 tataagtaaaatttactttttaagttcatt 58  Q
    ||||||||||||||||||||||||||||||    
T  68024 tataagtaaaatttactttttaagttcatt 67995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 42761358 - 42761329
Alignment:
Q  29 tataagtaaaatttactttttaagttcatt 58  Q
    ||||||||||||||||||||||||||||||    
T  42761358 tataagtaaaatttactttttaagttcatt 42761329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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