View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_high_67 (Length: 244)

Name: NF0841_high_67
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_high_67
NF0841_high_67
[»] chr8 (1 HSPs)
chr8 (1-237)||(38554053-38554290)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 38554053 - 38554290
Alignment:
Q  1 aacaagtatacgcgattttgattaatttccatcgcattcatctaagtatcaatccctttcaccttcttctcaatttcatcaataattttcgtcacaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  38554053 aacaagtatacgcgattttgattaatttccatcgcattcatctaagtatcaatccctttcaccttcttctatatttcatcaataattttcgtcacaattt 38554152  T
Q  101 tcgttctatc-gttacatagtagcttaatttggttttaacgcgagttcaatttggannnnnnngttgctcgtaacttgaatcacataaaaatagtcaaat 199  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  38554153 tcgttctatctgttacatagtagtttaatttggttttaacgcgagttcaatttggatttttttgttgctcgtaacttgaatcacataaaaatagtcaaat 38554252  T
Q  200 tagggtttggtgctcgttgttttactatgcctatgcta 237  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  38554253 tagggtttggtgctcgttgttttacgatgcctgtgcta 38554290  T

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