View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_high_72 (Length: 228)
Name: NF0841_high_72
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_high_72 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 1701996 - 1701774
Alignment:
| Q |
6 |
agtttcaacttttgaatgaaaatttggaaatatagtaacaacatcagttttactttttaacagataaatccaagaatattgagtaaaatgatcaacaaac |
105 |
Q |
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| T |
1701996 |
agtttcaacttttgaatgaaaatttggaaatatagtaacaacatcagttttactttttaacggataaatccaagaatatcgagtaaaatgatcaacaaac |
1701897 |
T |
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| Q |
106 |
acaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagctacggttttgatagaagaaa |
205 |
Q |
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| T |
1701896 |
acaagataatatttgtaaccatgaactgaagtgataggagagggtccccaaacatcagaaaataacagttcaagaggagctgtggttttgatagaagaaa |
1701797 |
T |
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| Q |
206 |
ctgaaaaaggaagtttatgactt |
228 |
Q |
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| T |
1701796 |
cagaaaaaggaagcttatgactt |
1701774 |
T |
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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 181434 - 181347
Alignment:
| Q |
141 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctacggttttgatagaagaaactgaaaaaggaagtttatgactt |
228 |
Q |
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| T |
181434 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctgcggttttgatagaagaaactgaaaaaggaagcttatgactt |
181347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 26592504 - 26592600
Alignment:
| Q |
68 |
gataaatccaagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcaga |
164 |
Q |
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| T |
26592504 |
gataaatccatgtatatctagtaaagtggtcaacaaacacaagatagtatctataaccattaatggatgttataggggatggtccccaaacatcaga |
26592600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 5400652 - 5400574
Alignment:
| Q |
86 |
gagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcaga |
164 |
Q |
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| T |
5400652 |
gagtgaaatggtcaacaaagacaagataatacctgtaaccattaatggacgttataggggatggtccccaaacatcaga |
5400574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 3541627 - 3541549
Alignment:
| Q |
86 |
gagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcaga |
164 |
Q |
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| T |
3541627 |
gagtgaaatggtcaacaaagacaagataatacttgtaaccattgatggacgttataggggatggtccccaaacatcaga |
3541549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 183
Target Start/End: Complemental strand, 31098935 - 31098805
Alignment:
| Q |
53 |
ttttactttttaacagataaatccaagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtcc |
152 |
Q |
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|||||||||||| |||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||| | | | | || ||||| |||| |
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| T |
31098935 |
ttttactttttaggggataaatccatttatatctagtaaaatgatcaacgaacacaagataatatttgtatccactgatagtgttaattggagagggtct |
31098836 |
T |
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| Q |
153 |
ccaaacatcagaaaataacagttcaagagga |
183 |
Q |
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| T |
31098835 |
ccaaacatcagaaaaaatgagttcaagagga |
31098805 |
T |
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