View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_high_8 (Length: 651)
Name: NF0841_high_8
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 96 - 437
Target Start/End: Complemental strand, 33655408 - 33655067
Alignment:
| Q |
96 |
ctactaaactaccaataaaaccctcttgcatcaatatcttgtacagttagctccagaagtttgttactcttattgattttgaaaattgcagattatagct |
195 |
Q |
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| T |
33655408 |
ctactaaattaccaataaaaccctcctgcatcaatatcttgtacagttagctccagaagtttgttactcttattgattttgaaaattgcagattatagct |
33655309 |
T |
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| Q |
196 |
tgccagcatcagttcaaacaccatcatccgatggaagggctcaaatgccgaggtcatggccgaaccatcatccacactacattcacaattttcagggtca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33655308 |
tgccagcatcagttcaaacaccatcatccgatggaagggctcaaatgctgaggtcatggccgaaccatcatccacagtacattcacaattttcagggtca |
33655209 |
T |
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| Q |
296 |
tggatttcaacaaacacctccataccaaggatacatgtatcctggtatgcaggttccgtctccgtattatcctgggaatatgcaatggcctccaaacggg |
395 |
Q |
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| T |
33655208 |
tgcatttcaacaaacgcctccataccaaggatacatgtatcctggtatgcaggttccgtctccgtattatcctgggaatatgcaatggcctccaaacggg |
33655109 |
T |
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| Q |
396 |
gatcgctctcacatcgttcatgaccaagaaatggattctcat |
437 |
Q |
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| T |
33655108 |
gatcgctctcacattgttcatgaccaagaaatggattctcat |
33655067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 465 - 620
Target Start/End: Complemental strand, 33655039 - 33654884
Alignment:
| Q |
465 |
tctcaggtattggatcactctgaagaagacgagtcaactgcatcctctgagtctacttatgagagtgattcagatgacaattcaaagcgaagcaacaaga |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33655039 |
tctcaggtattggatcactctgaagaagacgagtcaactgcatcctctgagtctacttatgagagtgattcagatgacaattcaaagcgaagcaacaaga |
33654940 |
T |
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| Q |
565 |
aacatggaaagaaatcgtcaaggaaggtagttatccgtaacacaaactatataact |
620 |
Q |
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| T |
33654939 |
aacatggaaagaagtcgtcaaggaaagtagttatccgtaacataaactatataact |
33654884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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