View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0841_low_10 (Length: 651)
Name: NF0841_low_10
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 34 - 603
Target Start/End: Original strand, 33654470 - 33655039
Alignment:
| Q |
34 |
ggaatcatttgaaactactcgagttttagtgacgccttcttcatggtggttaaactcatttgaccttccattctcatacttcttggtcatagtatattct |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33654470 |
ggaatcatttgaaactactcgagttttagtgacgccttcttcatggtggttaaactcatttgaccttccattctcatacttcttggtcatagtatattct |
33654569 |
T |
|
| Q |
134 |
tcctgaaacttcattggctgtttttctatatcatgagtagaatcatcatcgtctatcaaaagaagattctggaaagcatcccagttgttatcacctttta |
233 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33654570 |
tcctgaaacctcattggctgtttttctatatcatgagtagaatcatcatcgtctatcaaaagaagattctggaaagcatcccagttgttatcacctttta |
33654669 |
T |
|
| Q |
234 |
tgccgttggaatcagcattccttgaaccatttagcatgtcatggggctttgcgctatgttgtttcttatgctgacgagaggttgacctgtttcttttatc |
333 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
33654670 |
tgccgatggaatcagcattccttgaaccatttagcatgtcatggggctttgcgctatgttgtttcttatgctgacgagaggttggcctgtttcttttctc |
33654769 |
T |
|
| Q |
334 |
cagtgacgcaacagcttcctctaccttgtgtttcaaggaatttccattgataaattcttcctcattcgacaaactcccttcagtgatactacctttttct |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33654770 |
cagtgacgcaacagcttcctctaccttgtgtttcaaggaatttccattgataaattcttcctcattcgacaaactcccttcagtgatactacctttttct |
33654869 |
T |
|
| Q |
434 |
ccgtctccattggaagttatatagtttatgttacggataactaccttccttgacgatttctttccatgtttcttgttgcttcgctttgaattgtcatctg |
533 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33654870 |
ccgtctcccttggaagttatatagtttatgttacggataactactttccttgacgacttctttccatgtttcttgttgcttcgctttgaattgtcatctg |
33654969 |
T |
|
| Q |
534 |
aatcactctcataagtagactcagaggatgcagttgactcgtcttcttcagagtgatccaatacctgaga |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33654970 |
aatcactctcataagtagactcagaggatgcagttgactcgtcttcttcagagtgatccaatacctgaga |
33655039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 986 times since January 2019
Visitors: 6135