View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_14 (Length: 584)
Name: NF0841_low_14
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_14 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 29 - 571
Target Start/End: Complemental strand, 37272367 - 37271820
Alignment:
| Q |
29 |
atgcacatcttgatttcattatgctaactatgacatgataaatgcaaaatcaaaatgtgttcattaagtatcaagttatgtttagtaaatttgttgactt |
128 |
Q |
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| T |
37272367 |
atgcacatcttgatttcattatgctaactatgacatgataaatgcaaaatcaaaatgtgttcattaagtatcaagttatgtttagtaaatttgttgactt |
37272268 |
T |
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| Q |
129 |
tactgtaagtagttgtagaaatagaacattgacattgaggaggctgttacagaatatgtattctgttaaggaatttgtttagcttgttaaagttagatag |
228 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37272267 |
tactataagtagttgtagaaatagaacattgacattgagggggctgttacagaatatgtattctgttaaggaatttgtttagcttgttaaagttagatag |
37272168 |
T |
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| Q |
229 |
catttagtttggtagttaattgctctata-----tagagatcttactgnnnnnnnnnnnnnnnnnnnnnaatatgattccatttggatctaaatctctct |
323 |
Q |
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| T |
37272167 |
catttagtttggtagttaattgctctatactatatagagatcttactgttttttattttttatttttttaatatgattccatttggatctaaatctctct |
37272068 |
T |
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| Q |
324 |
caaagctttccaagcttctttcttaatttcctccaaaattctaccactttctagacacattagggtagtatataagatgatgcacccttgtaaaaggagg |
423 |
Q |
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| T |
37272067 |
caaagctttccaagcttctttcttaatttcctccaaaattctaccactttctagacacattagggtagtatataagatgatgcacccttgtaaaaggagg |
37271968 |
T |
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| Q |
424 |
tgagagatacattctatagaataattgatcaagtgagggagttgtcattttccttagacttatttttgctgctgctttcggcttgatcgatcatagtgat |
523 |
Q |
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| T |
37271967 |
tgagagatacattccatagaataattgatcaagtgagggagttgtcattttccttagacttatttttgctgctgctttcggcttgatcgatcatagtgat |
37271868 |
T |
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| Q |
524 |
aggactgaacttagtgagaatgtaggagacattgttctgaacctagaa |
571 |
Q |
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| T |
37271867 |
aggattgaacttagtgagaatgtaggagacattgttctgaacctagaa |
37271820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 37268059 - 37268001
Alignment:
| Q |
213 |
tgttaaagttagatagcatttagtttggtagttaattgctctatatagagatcttactg |
271 |
Q |
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| T |
37268059 |
tgttaaagttggttagcatttagtttggtagttaactgctctatatagagatcttactg |
37268001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 478 - 571
Target Start/End: Complemental strand, 37266916 - 37266827
Alignment:
| Q |
478 |
tagacttatttttgctgctgctttcggcttgatcgatcatagtgataggactgaacttagtgagaatgtaggagacattgttctgaacctagaa |
571 |
Q |
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| T |
37266916 |
tagacttcttgttgctgctgcattcggcttgatc----atggtgataggatcgaacttagtgagagtgtaggagaaattgttctgaacctagaa |
37266827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 37268321 - 37268261
Alignment:
| Q |
29 |
atgcacatcttgatttcattatgctaactatgacatgataaatgcaaaatcaaaatgtgtt |
89 |
Q |
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| T |
37268321 |
atgcacatcttgatttcattaggctagctatgacataataaatgcataatcaaaatgtgtt |
37268261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 37268260 - 37268174
Alignment:
| Q |
113 |
gtaaatttgttgactttactgtaagtagttgtagaaatagaa-catt-gacattgaggaggctgttacagaatatgtattctgttaa |
197 |
Q |
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| T |
37268260 |
gtaaatttgttgaattaactgtaagtagttgcaagactaaaaacatttgacattgagagggctgttacagaatatgtattctgttaa |
37268174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 20791363 - 20791326
Alignment:
| Q |
293 |
aatatgattccatttggatctaaatctctctcaaagct |
330 |
Q |
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| T |
20791363 |
aatatgattccatttgagtctaaatctctctcaaagct |
20791326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0092 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 14362 - 14306
Alignment:
| Q |
104 |
ttatgtttagtaaatttgttgactttactgtaagtagttgtagaaatagaacattga |
160 |
Q |
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| T |
14362 |
ttatgtctggtaaatttgttgactttattgtgagtagttgtaagaataaaacattga |
14306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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