View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_low_16 (Length: 574)

Name: NF0841_low_16
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_low_16
NF0841_low_16
[»] chr2 (1 HSPs)
chr2 (34-486)||(33654470-33654922)


Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 34 - 486
Target Start/End: Original strand, 33654470 - 33654922
Alignment:
Q  34 ggaatcatttgaaactactcgagttttagtgacgccttcttcatggtggttaaactcatttgaccttccattctcatacttcttggtcatagtatattct 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33654470 ggaatcatttgaaactactcgagttttagtgacgccttcttcatggtggttaaactcatttgaccttccattctcatacttcttggtcatagtatattct 33654569  T
Q  134 tcctgaaacttcattggctgtttttctatatcatgagtagaatcatcatcgtctatcaaaagaagattctggaaagcatcccagttgttatcacctttta 233  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33654570 tcctgaaacctcattggctgtttttctatatcatgagtagaatcatcatcgtctatcaaaagaagattctggaaagcatcccagttgttatcacctttta 33654669  T
Q  234 tgccgttggaatcagcattccttgaaccatttagcatgtcatggggctttgcgctatgttgtttcttatgctgacgagaggttgacctgtttcttttatc 333  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  33654670 tgccgatggaatcagcattccttgaaccatttagcatgtcatggggctttgcgctatgttgtttcttatgctgacgagaggttggcctgtttcttttctc 33654769  T
Q  334 cagtgacgcaacagcttcctctaccttgtgtttcaaggaatttccattgataaattcttcctcattcgacaaactcccttcagtgatactacctttttct 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33654770 cagtgacgcaacagcttcctctaccttgtgtttcaaggaatttccattgataaattcttcctcattcgacaaactcccttcagtgatactacctttttct 33654869  T
Q  434 ccgtctccattggaagttatatagtttatgttacggataactaccttccttga 486  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  33654870 ccgtctcccttggaagttatatagtttatgttacggataactactttccttga 33654922  T

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