View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_16 (Length: 574)
Name: NF0841_low_16
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 34 - 486
Target Start/End: Original strand, 33654470 - 33654922
Alignment:
| Q |
34 |
ggaatcatttgaaactactcgagttttagtgacgccttcttcatggtggttaaactcatttgaccttccattctcatacttcttggtcatagtatattct |
133 |
Q |
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| T |
33654470 |
ggaatcatttgaaactactcgagttttagtgacgccttcttcatggtggttaaactcatttgaccttccattctcatacttcttggtcatagtatattct |
33654569 |
T |
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| Q |
134 |
tcctgaaacttcattggctgtttttctatatcatgagtagaatcatcatcgtctatcaaaagaagattctggaaagcatcccagttgttatcacctttta |
233 |
Q |
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| T |
33654570 |
tcctgaaacctcattggctgtttttctatatcatgagtagaatcatcatcgtctatcaaaagaagattctggaaagcatcccagttgttatcacctttta |
33654669 |
T |
|
| Q |
234 |
tgccgttggaatcagcattccttgaaccatttagcatgtcatggggctttgcgctatgttgtttcttatgctgacgagaggttgacctgtttcttttatc |
333 |
Q |
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| T |
33654670 |
tgccgatggaatcagcattccttgaaccatttagcatgtcatggggctttgcgctatgttgtttcttatgctgacgagaggttggcctgtttcttttctc |
33654769 |
T |
|
| Q |
334 |
cagtgacgcaacagcttcctctaccttgtgtttcaaggaatttccattgataaattcttcctcattcgacaaactcccttcagtgatactacctttttct |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33654770 |
cagtgacgcaacagcttcctctaccttgtgtttcaaggaatttccattgataaattcttcctcattcgacaaactcccttcagtgatactacctttttct |
33654869 |
T |
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| Q |
434 |
ccgtctccattggaagttatatagtttatgttacggataactaccttccttga |
486 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33654870 |
ccgtctcccttggaagttatatagtttatgttacggataactactttccttga |
33654922 |
T |
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