View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_low_17 (Length: 551)

Name: NF0841_low_17
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_low_17
NF0841_low_17
[»] chr2 (27 HSPs)
chr2 (1-500)||(39372253-39372752)
chr2 (3-406)||(39179765-39180168)
chr2 (1-403)||(39217509-39217911)
chr2 (1-455)||(39385895-39386347)
chr2 (1-162)||(39379391-39379552)
chr2 (4-411)||(39163204-39163611)
chr2 (225-464)||(39224994-39225230)
chr2 (234-411)||(39204006-39204183)
chr2 (3-160)||(39224770-39224927)
chr2 (2-373)||(39395889-39396243)
chr2 (73-162)||(39204243-39204332)
chr2 (58-158)||(44894930-44895031)
chr2 (4-150)||(39425137-39425283)
chr2 (225-314)||(39379258-39379347)
chr2 (10-144)||(39159446-39159587)
chr2 (45-144)||(39492930-39493029)
chr2 (68-144)||(39209607-39209683)
chr2 (246-322)||(39492767-39492843)
chr2 (32-164)||(39132215-39132349)
chr2 (10-144)||(39145218-39145352)
chr2 (10-144)||(39188195-39188329)
chr2 (245-305)||(2363817-2363877)
chr2 (246-322)||(39131561-39131637)
chr2 (54-186)||(39469192-39469324)
chr2 (103-150)||(2363696-2363743)
chr2 (10-161)||(39125341-39125491)
chr2 (246-278)||(44894806-44894838)
[»] chr5 (2 HSPs)
chr5 (242-455)||(33563675-33563886)
chr5 (57-162)||(33563486-33563591)
[»] chr6 (1 HSPs)
chr6 (1-307)||(16115310-16115610)
[»] chr4 (2 HSPs)
chr4 (10-144)||(33153173-33153307)
chr4 (10-42)||(16439713-16439745)
[»] chr3 (1 HSPs)
chr3 (96-144)||(51577039-51577087)


Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 39372253 - 39372752
Alignment:
Q  1 atttgttgtagctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372253 atttgttgtagctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatt 39372352  T
Q  101 tgtgagagcagttgcaagaaaaccaactccattgaaatcaaggtacttttgtttttcttatttattctattgtatgaaacttttcattttcgcaagtacc 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372353 tgtgagggcagttgcaagaaaaccaactccattgaaatcaaggtacttttgtttttcttatttattctattgtatgaaacttttcattttcgcaagtacc 39372452  T
Q  201 cctgcatgataactataaataatcaataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgc 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372453 cctgcatgataactataaataaccaataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgc 39372552  T
Q  301 agtgcattttggatcacaacctgcaatctgcagatctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagttttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372553 agtgcattttggatcacaacctgcaatctgcagatctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagttttt 39372652  T
Q  401 gtactggaacagactaatatgtatagaaatggggtaatgcaaacctgctaacttagtacactaccattgtaccaagttatttggagtacatggctctctg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39372653 gtactggaacagactaatatgtatagaaatggggtaatgcaaacctgctaacttagtacaccaccattgtaccaagttatttggagtacatggctctctg 39372752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 3 - 406
Target Start/End: Original strand, 39179765 - 39180168
Alignment:
Q  3 ttgttgtagctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttg 102  Q
    |||||| |||||||||||||| || ||||||||||||||   ||||| || |  |||||||| | |||| ||||||||||||||||| ||||||||||||    
T  39179765 ttgttgcagctgttagattcagttgtgcatataacttggatgacaaggatcatttagttgatatgttgcgagaacacgtccagaatgtcaaactgatttg 39179864  T
Q  103 tgagagcagttgcaagaaaaccaactccattgaaatcaaggtacttttgtttttcttatt--tattctattgtatgaaac-----ttttcattttcgcaa 195  Q
    ||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||   |||||||| ||| ||||      || ||||||| |||    
T  39179865 tgaaagcagttgcaagaaaaccaattccattgaaatcaaggttcttctgtttttcttattgaaattctattttatcaaacattgtattccattttcacaa 39179964  T
Q  196 gtacccctgcatgataactataaataatcaataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgt 295  Q
     ||| ||||||||| |  ||||       |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||  | |||||    
T  39179965 atacgcctgcatgagagttata-------aataaattgttactgtatacttgaactcaggataaggccagagatcaagaaattgctagtcttgggactgt 39180057  T
Q  296 tctgcagtgcattttggatcacaacctgcaatctgcagatctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattag 395  Q
    ||| || |||||||  ||  |||||||  ||||| | | ||  ||| ||||||||||| | ||||||||||||||||| ||||||||||||||| |||||    
T  39180058 tctacaatgcatttcagacaacaaccttgaatctacgggtcaacttcataaggagattgactatcgcattcttgagctaaaagcacataaaggcaattag 39180157  T
Q  396 tttttgtactg 406  Q
    |||||| ||||    
T  39180158 tttttggactg 39180168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 39217509 - 39217911
Alignment:
Q  1 atttgttgtagctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatt 100  Q
    |||||||| |||||||||||||| || |||||| ||||||||  |||| ||| |||||||||||||||||| ||||  ||||||||||||||||||||||    
T  39217509 atttgttggagctgttagattcagttatgcatacaacttggctgacaataatcaactagttgatctcttgcgagaattcgtccagaatgccaaactgatt 39217608  T
Q  101 tgtgagagcagttgcaagaaaaccaactccattgaaatcaaggtacttttgtttttcttatt--tattctattgtatgaaactt-----ttcattttcgc 193  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||  |||||||||||||   |||||||  ||| |||| |     ||||||||| |    
T  39217609 tgtgagagcagttgcaagaaaatcaactccattgaaatcaaggttctgctgtttttcttattgaaattctatcttatcaaacattacacttcattttcac 39217708  T
Q  194 aagtacccctgcatgataactataaataatcaataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaact 293  Q
    |  ||||| || |||| |  ||||||||| |       ||||||||| ||||||||||||||||||||| ||||||||||||||||||| | || | |||    
T  39217709 acatacccttgtatgacagttataaataagc-------tattactatgtacttgaactcaggataaggctagagatcaagaaattgctaatttggggact 39217801  T
Q  294 gttctgcagtgcattttggatcacaacctgcaatctgcagatctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccatt 393  Q
    | ||||| ||| |||| |||   ||||||  ||||||  | |||||||   ||||| ||| | ||||||||||||||||| |||| |||||||||| |||    
T  39217802 gctctgctgtgtatttcggaatgcaacctagaatctgaggttctgcttataaaggaaattgactatcgcattcttgagctaaaaggacataaaggcaatt 39217901  T
Q  394 agtttttgta 403  Q
    || |||||||    
T  39217902 aggttttgta 39217911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 39386347 - 39385895
Alignment:
Q  1 atttgttgtagctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatt 100  Q
    |||||||| |||||||||||||| || |||||||||||||| | ||||||||  | |||||| | | |||| ||||||| |||||||||||| |||||||    
T  39386347 atttgttgaagctgttagattcagttgtgcatataacttggacgacaagaatcgattagttggtatgttgcgagaacacatccagaatgccagactgatt 39386248  T
Q  101 tgtgagagcagttgcaagaaaaccaactccattgaaatcaaggtacttttgtttttcttat--ttattctattgtatgaaac-----ttttcattttcgc 193  Q
    ||||||||||||||   ||||||||||||||||||||||||||| ||| |  |||||||||    |||||||| ||| ||||      || ||||||| |    
T  39386247 tgtgagagcagttgtctgaaaaccaactccattgaaatcaaggttcttcttcttttcttatagaaattctattttatcaaacattctattccattttcac 39386148  T
Q  194 aagtacccctgcatgataactataaataatcaataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaact 293  Q
    |  ||| |   |||||||  ||||       |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  39386147 acatacactaacatgatagttata-------aataaattgttactatgtacttgaactcaggataaggccagagatcaagaaattgctagtctggggact 39386055  T
Q  294 gttctgcagtgcattttggatcacaacctgcaatctgcagatctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccatt 393  Q
    ||||| || ||||||| |||| |||| ||  ||  ||  |||||||||  | | |||||| ||||||||||||||||||| ||||||||||||||| | |    
T  39386054 gttctacaatgcatttcggattacaaactagaagttgaggatctgcttctttatgagattgaatatcgcattcttgagctaaaagcacataaaggcaaat 39385955  T
Q  394 agtttttgtactggaacagactaatatgtatagaaatggggtaatgcaaacctgctaactta 455  Q
    ||||||||||||  |||| ||| | ||| | ||||||||||||||| |||| ||||||||||    
T  39385954 agtttttgtactaaaaca-actta-atgcaaagaaatggggtaatggaaacgtgctaactta 39385895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 39379552 - 39379391
Alignment:
Q  1 atttgttgtagctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatt 100  Q
    ||||||||||||||||||||||| || |||||||||||||||  |||||| ||||| |||||||||||||||| ||||| |||| |||||||||||||||    
T  39379552 atttgttgtagctgttagattcagttgtgcatataacttggctgacaagactaaacaagttgatctcttgcaacaacacatccaaaatgccaaactgatt 39379453  T
Q  101 tgtgagagcagttgcaagaaaaccaactccattgaaatcaaggtacttttgtttttcttatt 162  Q
    |||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39379452 tgtgcgaacagttgcaagaaaaccaactccattgaaatcaaggttcttttgtttttcttatt 39379391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 4 - 411
Target Start/End: Original strand, 39163204 - 39163611
Alignment:
Q  4 tgttgtagctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgt 103  Q
    ||||| |||||||| ||||| || ||||||| ||||||   ||||| || |  |||||||| | |||| | || ||||| | ||||||||||||||||||    
T  39163204 tgttgcagctgttaaattcagttttgcatatgacttggatgacaaggatcatttagttgatatgttgcgaaaatacgtcaaaaatgccaaactgatttgt 39163303  T
Q  104 gagagcagttgcaagaaaaccaactccattgaaatcaaggtacttttgtttttcttattta--ttctattgtatgaaacttttcatt-----ttcgcaag 196  Q
    |||||||||||||||||| | |||||||||| ||||||||| ||| ||||||||||||| |  || ||||  || |||| || ||||     ||| |||     
T  39163304 gagagcagttgcaagaaatcaaactccattggaatcaaggttcttctgtttttcttattgaaattttatttaatcaaaccttccattccatattcacaa- 39163402  T
Q  197 tacccctgcatgataactataaataatcaataaattattact-atatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgt 295  Q
    ||||| |||||||||  ||||||||| |       | ||||| || |||||||||||||||||||||||||||| ||||||||||||||||  | |||||    
T  39163403 tacccttgcatgatagttataaataaac-------tgttacttatgtacttgaactcaggataaggccagagatgaagaaattgctagtcttgggactgt 39163495  T
Q  296 tctgcagtgcattttggatcacaacctgcaatctgcagatctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattag 395  Q
    |||||| |||||||  ||   ||||||  ||||| | | ||||||| ||  ||| ||| ||||||||||||||||||| ||||||||||||||| |||||    
T  39163496 tctgcaatgcatttctgacagcaaccttgaatctacgggtctgcttcatgcggatattgaatatcgcattcttgagctaaaagcacataaaggctattag 39163595  T
Q  396 tttttgtactggaaca 411  Q
    |||||| |||||||||    
T  39163596 tttttggactggaaca 39163611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 225 - 464
Target Start/End: Original strand, 39224994 - 39225230
Alignment:
Q  225 aataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatca-caacctg 323  Q
    |||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| || ||| || |||     
T  39224994 aataaattgttactgtgtacttgaactcaggataaggccagagatcaagaaattgctagtctggggactgttctgcaatgcatttcgg-tcagcagccta 39225092  T
Q  324 caatctgcagatctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagtttttgtactggaacagactaatatgta 423  Q
     ||||||| | ||||||| ||||||||||  | ||||||||||||||||| |||||||||||||||  ||||||||||  ||| ||||  |||  |||||    
T  39225093 gaatctgcgggtctgcttcataaggagatcgactatcgcattcttgagctcaaagcacataaaggctgttagtttttgggctgaaacaagcta--atgta 39225190  T
Q  424 tagaaatggggtaatgcaaacctgctaacttagtacactac 464  Q
     | ||||||||||||| ||||||||||||||| ||||||||    
T  39225191 aacaaatggggtaatggaaacctgctaactta-tacactac 39225230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 234 - 411
Target Start/End: Complemental strand, 39204183 - 39204006
Alignment:
Q  234 ttactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatcacaacctgcaatctgcag 333  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||  | ||||||||||| |||||||  |||  ||||||  ||||| | |    
T  39204183 ttactatgtacttgaactcaggataaggccagagatgaagaaattgctagtcttgggactgttctgcaatgcatttctgatagcaaccttgaatctacgg 39204084  T
Q  334 atctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagtttttgtactggaaca 411  Q
     ||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||||||    
T  39204083 gtctgcttcataaggagattgaatatcgcattcttgagctaaaagcacataaaggctattagttattggactggaaca 39204006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 3 - 160
Target Start/End: Original strand, 39224770 - 39224927
Alignment:
Q  3 ttgttgtagctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttg 102  Q
    |||||| |||||||   |||| || ||||||||||||| |  ||||| || || |||||||| | ||||||||||| ||||||||||||||||| |||||    
T  39224770 ttgttgaagctgttcagttcagttgtgcatataacttgactgacaaggatcaattagttgatatgttgcaagaacatgtccagaatgccaaacttatttg 39224869  T
Q  103 tgagagcagttgcaagaaaaccaactccattgaaatcaaggtacttttgtttttctta 160  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  39224870 tgagagcagttgcaagaaaaccaactccattgaaatcaaggttcttctgtttttctta 39224927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 2 - 373
Target Start/End: Complemental strand, 39396243 - 39395889
Alignment:
Q  2 tttgttgtagctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgattt 101  Q
    |||||||||||||||||||||| || ||| |||||||||||  || | ||| ||  | ||||| | |||| |||||||||||||||||||||||||||||    
T  39396243 tttgttgtagctgttagattcagttgtgcgtataacttggctgacgaaaatcaatcaattgatatgttgcgagaacacgtccagaatgccaaactgattt 39396144  T
Q  102 gtgagagcagttgcaagaaaaccaactccattgaaatcaaggtacttttgtttttcttatttattctattgtatgaaacttttcattttc--gcaagtac 199  Q
    |||||||||| ||||||||||| |||||| ||||||||||||   |||| |||||||      ||||||| |||||| | || |||||||   ||  |||    
T  39396143 gtgagagcagctgcaagaaaactaactccgttgaaatcaagg---ttttttttttct------ttctattctatgaaccattccattttcatacatatac 39396053  T
Q  200 ccctgcatgataactataaataatcaataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctg 299  Q
    |  ||||||||       | | || ||||||||  |||||   ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||     
T  39396052 ctatgcatgat-------agtcataaataaatttctacta---acttgaactcaggataaggccagagatcaagaaattgcttgtctgggaactgttcta 39395963  T
Q  300 cagtgcattttggatcacaacctgcaatctgcagatctgcttgataaggagattcaatatcgcattcttgagct 373  Q
    || |||||||  ||  |||  ||  |||| |  |||||||||   ||||||||||||||||| |||||||||||    
T  39395962 caatgcatttcagagaacagtctagaatcagaggatctgcttcgcaaggagattcaatatcgtattcttgagct 39395889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 39204332 - 39204243
Alignment:
Q  73 agaacacgtccagaatgccaaactgatttgtgagagcagttgcaagaaaaccaactccattgaaatcaaggtacttttgtttttcttatt 162  Q
    |||| ||||| | |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||||||    
T  39204332 agaatacgtcaaaaatgccaaactgatttgtgagagcagttgcaagaaatcaaactccattgaaatcaaggttcttctgtttttcttatt 39204243  T

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Target: chr2; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 44895031 - 44894930
Alignment:
Q  58 agttgatctcttgcaagaacacgtccagaatgccaaactgatttgtg-agagcagttgcaagaaaaccaactccattgaaatcaaggtacttttgttttt 156  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| |||||| ||||| | ||||| ||||| ||||||||||||| |||||||||||    
T  44895031 agttgatctcttgcagaaacacgtccagaatgccaaactgatttgtgaagagcacttgcatggaaaccgactccgttgaaatcaaggttcttttgttttt 44894932  T
Q  157 ct 158  Q
    ||    
T  44894931 ct 44894930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 39425283 - 39425137
Alignment:
Q  4 tgttgtagctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgt 103  Q
    ||||| |||||||  ||||| || ||||| |||||||  |||||| ||| || ||||||||||||||| |||||| || |||||||| |||||||||| |    
T  39425283 tgttgaagctgtttcattcagttgtgcatttaacttgagcaacaataatcaattagttgatctcttgcgagaacatgtgcagaatgcaaaactgatttct 39425184  T
Q  104 gagagcagttgcaagaaaaccaactccattgaaatcaaggtactttt 150  Q
    ||||| | ||||| ||||||||||||||| ||||| ||||| |||||    
T  39425183 gagagtacttgcatgaaaaccaactccatcgaaattaaggttctttt 39425137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 39379347 - 39379258
Alignment:
Q  225 aataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggat 314  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||  ||||||||  || ||||||| ||||    
T  39379347 aataaattattactatgtacttgaactcaggataaggctagagatcaagaaattgctagtttggaaactgttcaacaatgcatttcggat 39379258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 39159446 - 39159587
Alignment:
Q  10 agctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctct-------tgcaagaacacgtccagaatgccaaactgatttg 102  Q
    |||||||||||||| || |||||||||||||||  |||||||| ||||| ||||| | |       ||| ||||||| |||||||||| |||| ||||||    
T  39159446 agctgttagattcagttgtgcatataacttggcttacaagaattaactaattgatatgtaatatgttgcgagaacacatccagaatgcgaaacggatttg 39159545  T
Q  103 tgagagcagttgcaagaaaaccaactccattgaaatcaaggt 144  Q
    ||| ||||||||  ||||||| ||||| ||||||||||||||    
T  39159546 tgatagcagttgtgagaaaactaactcaattgaaatcaaggt 39159587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 39493029 - 39492930
Alignment:
Q  45 acaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagagcagttgcaagaaaaccaactccattgaaatcaaggt 144  Q
    |||| ||| ||||||||||||||||  ||||||| || ||||||   ||||| |||| |||||||| ||||||| ||||||||||||||||||| |||||    
T  39493029 acaataatcaactagttgatctctttgaagaacatgtgcagaatctaaaactaatttctgagagcatttgcaaggaaaccaactccattgaaattaaggt 39492930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 39209683 - 39209607
Alignment:
Q  68 ttgcaagaacacgtccagaatgccaaactgatttgtgagagcagttgcaagaaaaccaactccattgaaatcaaggt 144  Q
    |||| ||||||| |||||||||| |||| ||||||||| ||||||||  ||||||| ||||| ||||||||||||||    
T  39209683 ttgcgagaacacatccagaatgcgaaacggatttgtgatagcagttgtgagaaaactaactcaattgaaatcaaggt 39209607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 39492843 - 39492767
Alignment:
Q  246 tgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatcacaacct 322  Q
    ||||||||||| |||||||||||||||||| |||||||||| | | ||||||| ||||||||| | ||| |||||||    
T  39492843 tgaactcaggacaaggccagagatcaagaagttgctagtctcaaagctgttctacagtgcattatagataacaacct 39492767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 164
Target Start/End: Original strand, 39132215 - 39132349
Alignment:
Q  32 tataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagagcagttgcaagaaaaccaactcca 131  Q
    |||||||||||| |||||||||||||| | | |||||||| | ||||||  || ||||| |||||||  | ||||||||||| || |||||| |||||      
T  39132215 tataacttggcctacaagaataaactattcgctctcttgcgataacacgcacataatgcaaaactgaactctgagagcagttccatgaaaacaaactcat 39132314  T
Q  132 ttgaaatcaaggtact--tttgtttttcttattta 164  Q
    |||||||||||   ||  |||||||||||||||||    
T  39132315 ttgaaatcaagactcttgtttgtttttcttattta 39132349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 39145218 - 39145352
Alignment:
Q  10 agctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagagc 109  Q
    |||||||||||||| || ||||||||||||   |||||| | | | ||||||||| |||| |||||||| || ||||||   ||  | || | |||||||    
T  39145218 agctgttagattcagttgtgcatataacttcagcaacaatactcagctagttgatatctttcaagaacatgtgcagaatctaaatttaatctttgagagc 39145317  T
Q  110 agttgcaagaaaaccaactccattgaaatcaaggt 144  Q
    ||||||||| || |||||||||||||||| |||||    
T  39145318 agttgcaaggaagccaactccattgaaattaaggt 39145352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 39188329 - 39188195
Alignment:
Q  10 agctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagagc 109  Q
    |||||||||||||| || ||||||||||||   |||||| | | | ||||||||| |||| |||||||| || ||||||   ||  | || | |||||||    
T  39188329 agctgttagattcagttgtgcatataacttcagcaacaatactcagctagttgatatctttcaagaacatgtgcagaatctaaatttaatctttgagagc 39188230  T
Q  110 agttgcaagaaaaccaactccattgaaatcaaggt 144  Q
    ||||||||| || |||||||||||||||| |||||    
T  39188229 agttgcaaggaagccaactccattgaaattaaggt 39188195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 2363817 - 2363877
Alignment:
Q  245 ttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgc 305  Q
    ||||| |||||||||||| | ||| |||||||||||||||||| |||||||||| ||||||    
T  2363817 ttgaaatcaggataaggcaaaagaccaagaaattgctagtctgggaactgttctacagtgc 2363877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 39131561 - 39131637
Alignment:
Q  246 tgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatcacaacct 322  Q
    ||||||||||| |||||||||||||||||| ||||| |||| | | ||||||| || |||||| | ||| |||||||    
T  39131561 tgaactcaggacaaggccagagatcaagaagttgcttgtctcatagctgttctacaatgcattatagataacaacct 39131637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 39469192 - 39469324
Alignment:
Q  54 aactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagagcagttgcaagaaaaccaactccattgaaatcaaggtacttttgtt 153  Q
    ||||||||||||| ||  |||| || || ||||||   ||||| |||| |||||||| |||||||  |||||||||||||||||| ||||| ||||   |    
T  39469192 aactagttgatctattcgaagagcatgtgcagaatctaaaactaatttctgagagcatttgcaagggaaccaactccattgaaattaaggttcttt--gt 39469289  T
Q  154 tttcttattta--ttctattgtatgaaacttttca 186  Q
    ||||||||| |  ||||||| |||||||| |||||    
T  39469290 tttcttattcaatttctattttatgaaacatttca 39469324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 2363696 - 2363743
Alignment:
Q  103 tgagagcagttgcaagaaaaccaactccattgaaatcaaggtactttt 150  Q
    ||||||||||||||||  |||||||||||| ||||||||||| |||||    
T  2363696 tgagagcagttgcaaggcaaccaactccatagaaatcaaggttctttt 2363743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 39125341 - 39125491
Alignment:
Q  10 agctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagagc 109  Q
    |||||||||||||| |  ||||||||||||   |||| | ||| |||||| |||||||||  ||||||| || || |||   ||||| |||| |||||||    
T  39125341 agctgttagattcagtcgtgcatataacttcagcaacgataatcaactagctgatctctttgaagaacatgtgca-aatctaaaactaatttctgagagc 39125439  T
Q  110 agttgcaagaaaaccaactccattgaaatcaaggtacttttgtttttcttat 161  Q
    | ||||||| ||||| |||| |||||||| || || ||| | ||||||||||    
T  39125440 aattgcaaggaaaccgactctattgaaattaaagttcttatttttttcttat 39125491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 44894838 - 44894806
Alignment:
Q  246 tgaactcaggataaggccagagatcaagaaatt 278  Q
    |||| ||||||||||||||||||||||||||||    
T  44894838 tgaattcaggataaggccagagatcaagaaatt 44894806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 242 - 455
Target Start/End: Original strand, 33563675 - 33563886
Alignment:
Q  242 tacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatcacaacctgcaatctgcagatctgctt 341  Q
    |||||||| ||||||||||||||||||||||||||||||||||||  | |||||| | || |||||||  ||  |||  ||  ||||||| |||||||||    
T  33563675 tacttgaattcaggataaggccagagatcaagaaattgctagtctcgggactgttttacaatgcatttcagagaacagactagaatctgcggatctgctt 33563774  T
Q  342 gataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagtttttgtactggaacagactaatatgtatagaaatggggtaatgca 441  Q
     ||||||||||| |  |||||||||||| ||| ||| ||||||||||| ||||||||||| | |||||||  |||  ||||| ||||||||||||||  |    
T  33563775 cataaggagattgaccatcgcattcttgtgctaaaatcacataaaggcaattagtttttggagtggaacaaccta--atgtaaagaaatggggtaatcga 33563872  T
Q  442 aacctgctaactta 455  Q
    ||| ||||||||||    
T  33563873 aacgtgctaactta 33563886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 33563486 - 33563591
Alignment:
Q  57 tagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagagcagttgcaagaaaaccaactccattgaaatcaaggtacttttgttttt 156  Q
    |||||||| | |||| ||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||  ||||||    
T  33563486 tagttgatatgttgcgagagcacgtccagaatgccaaactgatttgtgagagcttttgcaagaaaaccaactccattgaaatcaaggttcttccgttttt 33563585  T
Q  157 cttatt 162  Q
    ||||||    
T  33563586 cttatt 33563591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 16115310 - 16115610
Alignment:
Q  1 atttgttgtagctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatt 100  Q
    |||||||| ||||||||||||||  | |||||||||||||||  |||||||  || || ||||| | |||| |||||||||||||||||  |||||||||    
T  16115310 atttgttgaagctgttagattcagctgtgcatataacttggctgacaagaaccaattaattgatatgttgcgagaacacgtccagaatgtgaaactgatt 16115409  T
Q  101 tgtgagagcagttgcaagaaaaccaactccattgaaatcaaggtacttttgtttttcttattt--attctattgtatgaaacttttcattttcg-caagt 197  Q
    |||  |||| ||||  ||||||| ||||| |||||||||||||| ||| | ||||| | ||||  |||||||| |||||||| || |||||  | ||  |    
T  16115410 tgtacgagccgttgtgagaaaactaactcaattgaaatcaaggttcttatatttttttcatttgaattctattttatgaaacattccatttcagacatat 16115509  T
Q  198 acccctgcatgataactataaataatcaataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttc 297  Q
    ||| ||||||||||   |||| |      |||    ||||| |  |||||||||||||||||||| |||||||||||||| ||||||||| |||||||||    
T  16115510 accgctgcatgatagtcataact------taa---tttactttgaacttgaactcaggataaggctagagatcaagaaatcgctagtctgggaactgttc 16115600  T
Q  298 tgcagtgcat 307  Q
    | || |||||    
T  16115601 tacaatgcat 16115610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 33153173 - 33153307
Alignment:
Q  10 agctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagagc 109  Q
    ||||||||||||||| | ||| |||||| |||||||||||||| ||  ||||||||||||||| ||||| || |||| ||| ||| ||| || |||||||    
T  33153173 agctgttagattcatatgtgcttataacgtggccaacaagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtgacttatgagagc 33153272  T
Q  110 agttgcaagaaaaccaactccattgaaatcaaggt 144  Q
    |  ||||||| |||||||||||||||||| |||||    
T  33153273 aagtgcaagacaaccaactccattgaaataaaggt 33153307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 16439713 - 16439745
Alignment:
Q  10 agctgttagattcatttctgcatataacttggc 42  Q
    ||||||||||||||||||||||||||| |||||    
T  16439713 agctgttagattcatttctgcatataatttggc 16439745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 51577039 - 51577087
Alignment:
Q  96 tgatttgtgagagcagttgcaagaaaaccaactccattgaaatcaaggt 144  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  51577039 tgatttctgagagcaactgcaagaaaaccaactccattgaaatcaaggt 51577087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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