View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_18 (Length: 528)
Name: NF0841_low_18
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 253 - 418
Target Start/End: Complemental strand, 4655044 - 4654879
Alignment:
| Q |
253 |
ttaaatttgtgggaccacatatttacccattaaagttttcagggacaatataataaataaatcgtacattaactttttcctcattgtcttattaccagct |
352 |
Q |
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| T |
4655044 |
ttaaatttgtgggaccacatatttactcattaaagttttcagggacaatataataaataaatcgtacattaactttttcctcattgtcttattaccagct |
4654945 |
T |
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| Q |
353 |
aacactccatcctaatatattcacatttcacgattatttggccccaaactaaagatattattgagt |
418 |
Q |
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| T |
4654944 |
aacactccatcctaatatattcacatttcacgattatttggccccaaactaaagatattattgagt |
4654879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 76 - 255
Target Start/End: Complemental strand, 4656339 - 4656164
Alignment:
| Q |
76 |
gagggaatcctattccaattatcacccatgcataacacatgggttctatataatttatttattttgggacatgggctccatataaataaatattgaccac |
175 |
Q |
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| T |
4656339 |
gagggaatcctattccaattatcacccatgcataacacatgggttctatataatttatttattttgggacgtgggctccataaaaataaatattgaccac |
4656240 |
T |
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| Q |
176 |
nnnnnnngtttcatttatctttggaagtcttgaaatattgagagaacccctcgtgttaattgagtcgatttttactttta |
255 |
Q |
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| T |
4656239 |
aaaaaaagtttcatttatctttggaagtcttgaaatatt----gaacccatcgtgttaattgagtcgatttttactttta |
4656164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 460 - 521
Target Start/End: Complemental strand, 4654835 - 4654774
Alignment:
| Q |
460 |
ccctccacaacaataaacaattaagttgaaaaggtgacaggtagctagaatcattcatatca |
521 |
Q |
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| T |
4654835 |
ccctccacaacaataaacaattaagttgaaaaggtgacaggtagctagaatcattcatatca |
4654774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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