View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_22 (Length: 494)
Name: NF0841_low_22
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 207 - 490
Target Start/End: Complemental strand, 32414120 - 32413849
Alignment:
| Q |
207 |
ttacacaagcaagaccaaatgactgtttttacttaggagggagaacagaacaatgttgtatcaaccaccgttacaatcaagaagaatcctgctggctatt |
306 |
Q |
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| T |
32414120 |
ttacacaagcaagaccaaatgactgtttttacttaggagggagaacagaacaatgttgtatcaaccaccgttacaatcaagaagaatcctgctggctatt |
32414021 |
T |
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| Q |
307 |
cccagttccacctttaaatcctcctttgaaatctgaattcaccatatttccaacttggagaaatccttacttttagtattaccatcaatgtcttctcact |
406 |
Q |
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| T |
32414020 |
cccagttcc------------tcctttgaaatctgaattcaccatattcccaacttggagaaatccttacttttagtattaccatcaatgtcttctcact |
32413933 |
T |
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| Q |
407 |
cacaacgatggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctctgtgctgctc |
490 |
Q |
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| T |
32413932 |
cacaacgatggatatacaaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctcgatgctgctc |
32413849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 32414269 - 32414118
Alignment:
| Q |
28 |
cactaacaacttatctttagaaatatccacgttgtaaacacaaaaacatatttgaagagcaaaactactaacnnnnnnn--catatttagagaccaacat |
125 |
Q |
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| T |
32414269 |
cactaacaacttatctttagaaatatccacgttgtaaacacaaaaacatatttgaagagcaaaacgactaaaaaaaaaaaacatatttagtgaccaacat |
32414170 |
T |
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| Q |
126 |
gactaattaaagagaccattagagatgtgttttcaatttggatgcattatta |
177 |
Q |
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| T |
32414169 |
gactaattaaagagaccattagagatgtgttttcaatttggatgcattatta |
32414118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 490
Target Start/End: Complemental strand, 3395235 - 3395159
Alignment:
| Q |
414 |
atggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctctgtgctgctc |
490 |
Q |
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||||||| |||| |||||||||||||||||||| | || ||||| || | ||||||||||||||||| |||||||| |
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| T |
3395235 |
atggatacacgacgtgttcatcaattttagagggaaagatactcgcaagacttttgtttctcatctctatgctgctc |
3395159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 481
Target Start/End: Original strand, 3309581 - 3309648
Alignment:
| Q |
414 |
atggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctct |
481 |
Q |
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| T |
3309581 |
atggttatacgacgtgttcatcaatttcaggggaaaagacactcgcaacaattttgtttctcatctct |
3309648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 479
Target Start/End: Original strand, 15775342 - 15775407
Alignment:
| Q |
414 |
atggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatct |
479 |
Q |
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|||||| |||||||||||||| |||||||| || || || ||||||| ||||| ||||||||||| |
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| T |
15775342 |
atggatctacgaagtgttcataaattttaggggggaagatactcgtagcaatttcgtttctcatct |
15775407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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